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Name : rpoB (PSMK_24450) Accession : YP_005446501.1 Strain : Phycisphaera mikurensis NBRC 102666 Genome accession: NC_017080 Putative virulence/resistance : Unknown Product : DNA-directed RNA polymerase subunit beta Function : - COG functional category : - COG ID : - EC number : 2.7.7.6 Position : 2904550 - 2908365 bp Length : 3816 bp Strand : - Note : - DNA sequence : ATGCCGACTCCCGAAACCCCGCCTGTCCGCGACTACGCCAAGCGCGGCGACGCGCTCCCCGTCCCCCACCTCACGGTGGT GCAGCAGGCCTCCTACCGCCGCTTCCTCCAGGAGGACAAGGCCCCCGACCAGCGCGATCCGACGCTGGGCCTCGAAGCCC TCATGCGGGAGGTCTTCCCGATCGTGTCGTACGACGAGACGATGCAGATCGACTACCTCGACTACAAGCTCGAGGAGGCC CGCTACACGCCCGACGAGTGCCGCGAGCTGCGGCTCACCTACGGCATGCCCTTCCGCATCGGCGTGCGGCTGTCGCGGCA GGACAACCCCAACCTGGTCGACGAGGAGATCTACCTCGGCGAGCTGCCCATCCTCATGGGCGGCGGCGAGTTCATCATCA ACGGCGCCGAGCGGGTCATCGTCAACCAGCTGCACCGCAGCCCGGGCGTGGACTTCTCCATCGCCTCCAGCGAGGCCGAC CGCCCGCTGCACTCCGCCCGCGTGATCCCCGAGCGCGGCTCCTGGATCGAGCTGGAGGTGTCCAAGAAGGACGTCCTGCA GATGCGGATCGATCAGTCGACCAAGATCCCGGCGACGACGTTCCTGCGGGCGCTCGACGAGGACTTCTCGACCACCGAGA AGCTGATCGAGGCCTTCTACGAGACCGAGTCGATCCGCGTCACCGAGCTGACGGCGGAGCACTTCGTCGCCAAGGCCGTC ATCGACGAGGACACCGGCGAGGAGCTGCTGCCGATCGGCGCCCGGGTGGGCGACCGCCTCGACGGCATCGTCGCGTCGGA TCTGAAGACGATCGAGGTCATCGCCGGCGCCGCCGACGAGCTGATCCTCAACACGATCGCCGACGAGAAGCAGGCCCACC TGCCCGAGGACATGCAGGTCTCCGAGCACGAGGCCGCGCTGCTTGCGCTCTACGCCCGGCTGCGGCCCGGCAACCCGCCG CAGGTCGAGAAGGCCCGCTCGCTCTTCGAGGAGAAGTTCTACGACGAGAACCGCTACCGCCTCGGGAAGGTCGGCCGCTT CCGCATCAACCGCAAGTTCGAGGAGGTCGACATCCCCGAGGACGTCATGCGGCTCACGAGCCAGGACTTCCTCGCGGTCA TCAACTACCTGCTGGACCTGCGGGCGAACCGCAACAAGGCCCACATCGACGACATCGACCACCTGGGCAACCGCCGCCTC CGCACGCTCGACGAGCTCGCGGTGGAGGAGATGCGGAAGGGCTTCCTGAAGCTCCGCCGCACCGTGCAGGAGCGGATGGC CTCCAAGGACCCCGACGAGCTGACCAAGGTCGCCGACCTCATCAACTCCAAGAGCATCAGCTCCGCGGTGGACCACTTCT TCGGCCGCGGCGAGCTGTCGCAGGTCGTCGACCAGACCAACCCGCTCTCGCAGCTCACCCACGAGCGGCGGCTCTCGGCG CTGGGCCCCGGCGGGCTGAACCGCAAGCGGGCGGGCTTCGAGGTCCGCGACGTGCACATCAGCCACTACGGCCGCATCTG CCCGATCGAGACGCCGGAAGGCACGAACATCGGCTTGATCGCCAGCCTCGGCATCTTCTCCAAGGTGGATGACTACGGCT TCCTCCTGACGCCCTACCAGCGCATCGAGAACGGTGCGCTCAAGGCGGGCACGGTCGAGGAGCGGACCCACTACCTCCGC GCGGACGAGGAGATGCGCCTGACCCTCGGCCCCGCCGACTCCGTCGACGACTCCGGCAAGCTGAAGTCCGGCAACCTGCT GGCCCGCGTCGAGGGCGACCTCGCCCAGGTGTCCCCCGACCAGATCGACTACGTCGACATCAGCCCCAAGCAGATCGTCG GCGTCTCGGCGGCGATGATCCCCTTCCTCGAGCACGACGACGCGAACCGCGCCCTCATGGGCTCGAACATGCAGCGGCAG GCCGTGCCGCTCATCAAGGTCGATCCGCCGTGCGTCGGCACCGGCATGGAGCGGGAGATCCCGAAGCACTCGGGCATGGT CGTCCGGGCCCGCAACGCCGGCTCGGTCACCTACGTCGACGCGATGAAGATCATCGTCAACAACGCCGACGAGTACCCGC TGCGGAAGTTCGTGGGCCTCAACGAGCGGACCTGCCAAAACCAAAAGCCCATCGTCGAGCTCGGCGACGAGGTGGAGGAG GGCCAGATCATCGCCGACGGCGCCGCCACCCTCGAGGGCCAGCTGGCGCTGGGCAAGAACTGCTTGATCGCCTTCAACAC CTTCGACGGCTACAACTTCGAGGACGCGATCGTGATCTCCGAGCGGCTTGTGAAGGAGGACGTCTTCACGTCCATCCACA TCGACGAGTTCGACGTGGAGATCCGCGAGACCAAGCTCGGCCGCGAGGAGTTCACCCGCGACATCCCCAACGTCTCCGAG AAGATGCTCGCGATGCTCGACGAGGAGGGCGTCATCCGCACGGGTGCCTACGTCCGCCCCGGCGACATCCTCGTTGGCAA GGTGAGCCCCAAGAGCAAGAGCGAGCTGACCCCCGAGGAAAAGCTCTTGCACGCCATCTTCGGCCGCGCCGGCGAGGACG TGAAGAACGACTCGCTGGAGGTGCCCTCAGGCACCGAGGGCGTGGTGATCGGCTCCAAGCGGTTCAGCCGCCGGATGCAC CAGAGCGACGACCAGAAGAAGGCGCTCAAGCGGGAGATGCGCGAGTACGAGCAGAGCATGGACGACCAGGCGGTCGCCCT GTTCCGCGAGTTCGTGCAGCAGGTCAACGAAACCACCGGCACCGAGATGGTCGACCCGTCGACCCGTCAGAAGGTCGGCC AGAGCGACATCACCGAGGTCGTGATGGAGCAGATCGCCGACTTCAACATGAAGTGGGTCAAGGGAGCCAAGGAGGTCCGC GAGGACGCCGAGAAGCTCTACGCCCAATTCTGGCCGCGGATCGAGGGCCTGCAGAAGGAGCGTGACCGGCGGCTCGCCCA CATGAAGCGCGGCGATGAGCTGTCCTCGGGCGTGTTGGAGATGGTGAAGGTCTACCTCGCCACCAAGCGGCCGCTGTCGG TCGGCGACAAGATGGCCGGCCGCCACGGCAACAAGGGCGTCATCTCGCGGATCGTCCCCGAGCAGGACATGCCGTACCTC GAGGACGGCACGCCCGTGGACATCCTGCTCAACCCGCTGGGCATCGGCAAGCGGATGAACGTCGGCCAGGTGCTCGAGAC CCACCTGGGCTGGGCCGCCAAGGTCCTCGGCTTCCAGGCCATCACGCCCGTCTTCGACGGTGCGACCGAGGCCGAGGTGT TCGAGGCGATCGAGGAAGCCAACGGCTACGTCCAGAAGCGCCTGGCGGAGACCGGCGGCGCCCACGGGCCGCGCGAGCTG CTCGCCCACATGCCGCCCTCGGGCAAGATCCAGCTGTTCGACGGCCGCACCGGCGAGCCCTTCGACCAGAAGACCACGGT CGGCTTCATGTACATCATCAAGCTGCACCACCTCGTCGACGACAAGATCCACGCCCGGGCGACGGGGCCGTACAGCCTCA TCACCCAGCAGCCCCTCGGCGGCAAGGCGCGCACGGGCGGTCAGCGGTTCGGCGAGATGGAGGTCTGGGCCCTGGAGGCC TACGGCGCGGCGTACATCCTCCAGGAGCTCCTGACGGTGAAGTCCGACGACGTCGAGGGCCGGACCAAGATCTACGAGTC GATGGTTCGCGGGAACAACACCCTCGAGGCCGGCATGCCCGTCGCCTTCGACGTCCTCTGCAACGAGGTCCGCGGCCTCG GGCTCAACATCACCATGGAAAAGAAAGACGACGACGGCAGCGCGAGCTTCCTGTGA Protein sequence : MPTPETPPVRDYAKRGDALPVPHLTVVQQASYRRFLQEDKAPDQRDPTLGLEALMREVFPIVSYDETMQIDYLDYKLEEA RYTPDECRELRLTYGMPFRIGVRLSRQDNPNLVDEEIYLGELPILMGGGEFIINGAERVIVNQLHRSPGVDFSIASSEAD RPLHSARVIPERGSWIELEVSKKDVLQMRIDQSTKIPATTFLRALDEDFSTTEKLIEAFYETESIRVTELTAEHFVAKAV IDEDTGEELLPIGARVGDRLDGIVASDLKTIEVIAGAADELILNTIADEKQAHLPEDMQVSEHEAALLALYARLRPGNPP QVEKARSLFEEKFYDENRYRLGKVGRFRINRKFEEVDIPEDVMRLTSQDFLAVINYLLDLRANRNKAHIDDIDHLGNRRL RTLDELAVEEMRKGFLKLRRTVQERMASKDPDELTKVADLINSKSISSAVDHFFGRGELSQVVDQTNPLSQLTHERRLSA LGPGGLNRKRAGFEVRDVHISHYGRICPIETPEGTNIGLIASLGIFSKVDDYGFLLTPYQRIENGALKAGTVEERTHYLR ADEEMRLTLGPADSVDDSGKLKSGNLLARVEGDLAQVSPDQIDYVDISPKQIVGVSAAMIPFLEHDDANRALMGSNMQRQ AVPLIKVDPPCVGTGMEREIPKHSGMVVRARNAGSVTYVDAMKIIVNNADEYPLRKFVGLNERTCQNQKPIVELGDEVEE GQIIADGAATLEGQLALGKNCLIAFNTFDGYNFEDAIVISERLVKEDVFTSIHIDEFDVEIRETKLGREEFTRDIPNVSE KMLAMLDEEGVIRTGAYVRPGDILVGKVSPKSKSELTPEEKLLHAIFGRAGEDVKNDSLEVPSGTEGVVIGSKRFSRRMH QSDDQKKALKREMREYEQSMDDQAVALFREFVQQVNETTGTEMVDPSTRQKVGQSDITEVVMEQIADFNMKWVKGAKEVR EDAEKLYAQFWPRIEGLQKERDRRLAHMKRGDELSSGVLEMVKVYLATKRPLSVGDKMAGRHGNKGVISRIVPEQDMPYL EDGTPVDILLNPLGIGKRMNVGQVLETHLGWAAKVLGFQAITPVFDGATEAEVFEAIEEANGYVQKRLAETGGAHGPREL LAHMPPSGKIQLFDGRTGEPFDQKTTVGFMYIIKLHHLVDDKIHARATGPYSLITQQPLGGKARTGGQRFGEMEVWALEA YGAAYILQELLTVKSDDVEGRTKIYESMVRGNNTLEAGMPVAFDVLCNEVRGLGLNITMEKKDDDGSASFL |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 47 |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 47 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| rpoB | YP_005446501.1 | DNA-directed RNA polymerase subunit beta | CP000034.1.gene3741. | Protein | 0.0 | 48 |
| rpoB | YP_005446501.1 | DNA-directed RNA polymerase subunit beta | CP001918.1.gene250.p | Protein | 0.0 | 48 |
| rpoB | YP_005446501.1 | DNA-directed RNA polymerase subunit beta | NC_002695.1.914942.p | Protein | 0.0 | 48 |
| rpoB | YP_005446501.1 | DNA-directed RNA polymerase subunit beta | CP001138.1.gene4362. | Protein | 0.0 | 48 |
| rpoB | YP_005446501.1 | DNA-directed RNA polymerase subunit beta | CP000647.1.gene4402. | Protein | 0.0 | 48 |
| rpoB | YP_005446501.1 | DNA-directed RNA polymerase subunit beta | CP000675.2.gene392.p | Protein | 0.0 | 48 |
| rpoB | YP_005446501.1 | DNA-directed RNA polymerase subunit beta | NC_011586.7046027.p0 | Protein | 0.0 | 47 |
| rpoB | YP_005446501.1 | DNA-directed RNA polymerase subunit beta | NC_010400.5987325.p0 | Protein | 0.0 | 47 |
| rpoB | YP_005446501.1 | DNA-directed RNA polymerase subunit beta | NC_010611.6233925.p0 | Protein | 0.0 | 47 |
| rpoB | YP_005446501.1 | DNA-directed RNA polymerase subunit beta | NC_011595.7060572.p0 | Protein | 0.0 | 47 |
| rpoB | YP_005446501.1 | DNA-directed RNA polymerase subunit beta | NC_010410.6003841.p0 | Protein | 0.0 | 47 |
| rpoB | YP_005446501.1 | DNA-directed RNA polymerase subunit beta | NC_009085.4918494.p0 | Protein | 0.0 | 46 |
| rpoB | YP_005446501.1 | DNA-directed RNA polymerase subunit beta | CP004022.1.gene2794. | Protein | 0.0 | 46 |
| rpoB | YP_005446501.1 | DNA-directed RNA polymerase subunit beta | NC_008702.1.4609796. | Protein | 0.0 | 45 |
| rpoB | YP_005446501.1 | DNA-directed RNA polymerase subunit beta | CP002695.1.gene18.p0 | Protein | 0.0 | 44 |
| rpoB | YP_005446501.1 | DNA-directed RNA polymerase subunit beta | NC_002516.2.881699.p | Protein | 0.0 | 43 |
| rpoB | YP_005446501.1 | DNA-directed RNA polymerase subunit beta | NC_011035.1.6448762. | Protein | 0.0 | 41 |
