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Name : S23_28700 (S23_28700) Accession : YP_005450190.1 Strain : Bradyrhizobium sp. S23321 Genome accession: NC_017082 Putative virulence/resistance : Unknown Product : RNA polymerase beta subunit Function : - COG functional category : - COG ID : - EC number : - Position : 2969509 - 2973633 bp Length : 4125 bp Strand : + Note : - DNA sequence : ATGGCGCAGCAGACATTCACCGGTCGCAAACGCGTTCGCAAGTTCTTCGGACACATCAAGGAAGTCGCCGAGATGCCGAA CCTCATCGAGGTTCAGAAGGCGTCCTATGACCAGTTCCTGATGGTCGATGAACCCGTGGGCGGTCGTCTCGACGAGGGCC TGCAGGCCGTGTTCCGTTCCGTGTTCCCGATCTCCGACTTCTCGGGCACATCGATGCTGGAATTCGTCCGTTACGAGTTC GAGCAGCCGAAATACGACGTCGACGAGTGCCGCCAGCGCGGCATGACTTTCGCGGCTCCCCTCAAGGTGACGCTGCGCCT CATCGTGTTCGATATCGACGAGGAAACCGGCGCCAAGTCGGTGAAGGACATCAAGGAGCAGGACGTCTACATGGGCGATA TCCCGCTCATGACGATGAACGGCACCTTCATCGTCAACGGCACCGAGCGCGTCATCGTCTCGCAGATGCACCGTTCGCCC GGTGTGTTCTTCGACCATGACAAGGGCAAGACCCATTCTTCGGGCAAGCTGCTGTTCGCTGCCCGCGTGATCCCGTATCG CGGTTCCTGGCTCGACATCGAGTTCGACGCCAAGGACATCGTCTATGCGCGTATCGATCGTCGCCGCAAGATTCCGGTGA CGTCGCTGATGTTCGCGCTCGGCCTCGACGGCGAGGCGATCCTGTCGACGTTCTACAAGAAGATTCTCTACAAGCGGACC AAGGAAGGCTGGCGCGTTCCGTTCGACGCCAACCGTTTCCGCGGCTACTCAACCATCAACGACCTGATCGACGCCGATAC CGGCAAGGTCGTGCTCGAGGCCGGCAAGAAGCTCACCGTGCGCGGTGCGCGTCAGATGCAGGAGAAGGGCCTGAAGGCGC TGCGCCTGTCGGATGAGGAACTCGTCGGCAACTATCTGGCCGAGGACCTCGTCAATCCCAAGACCGGCGAGATCCACGCC GAAGCCGGTGAAGAGATCACCGACAAGTCCATGAAGGCCCTCAACGAGCACGGCTACAAGGAACTGCCGCTGCTCGACAT CGACCACGTCAATGTCGGCGCCTACATCCGCAACACGCTCGCGGCCGACAAGAACATGACGCGTGAGGACGCGCTGTTCG ACATCTACCGCGTGATGCGTCCGGGCGAGCCGCCGACGCTGGATTCGGCGCAGGCGATGTTCCAGTCGCTGTTCTTCGAC GCCGAGCGTTACGACCTCTCCGCGGTCGGCCGCGTCAAGATGAACATGCGCCTCGACCTCGATGCGCCCGACACCCAGCG CACGCTGCGCAAGGAAGACATCCTCTCCGTCATCAAGACGCTGGTGGATCTGCGCGACGGCAAGGGTGAGATCGACGACA TCGACCATCTCGGCAACCGCCGTGTGCGCTCGGTCGGCGAACTCATGGAGAACCAGTACCGCATCGGCTTGCTCCGCATG GAGCGCGCCATCAAGGAGCGCATGTCCTCGGTCGACATCGACACGGTCATGCCGCAGGACCTGATCAACGCCAAGCCGGC GGCTGCCGCCGTGCGCGAGTTCTTCGGCTCCTCGCAGCTCTCGCAGTTCATGGACCAGACCAACCCGCTGTCGGAGATCA CCCACAAGCGCCGTCTTTCGGCGCTTGGACCGGGCGGTCTGACCCGTGAGCGTGCCGGCTTCGAGGTGCGCGACGTGCAT CCGACGCATTACGGCCGTATCTGCCCGATCGAGACGCCGGAAGGCCCGAACATCGGCCTGATCAACTCGCTCGCCACCTT CGCGCGCGTGAACAAGTACGGCTTCGTCGAGACGCCTTATCGCAAGGTGAAGGACGGCCGCGTCACCGACGAGGTCGTGT ACCTCTCGGCGATGGAGGAGGGCCGCTACTCGGTCGCGCAGGCCAACGTGCCGATCGACGCCAAGGGCCGCTTCACCGAG GATCTGGTTGTCTGCCGTTCGAGCGGAACCCGCGACGTCGTGCCGATGACGCCCGACAAGGTCGACTACATGGACGTGTC GCCGAAGCAGCTCGTTTCGGTCGCCGCGGCGCTGATCCCGTTCCTCGAGAACGACGACGCCAACCGCGCGCTGATGGGTT CGAACATGCAGCGCCAGGCGGTGCCGCTGGTTCGCGCCGAGGCTCCGTTCGTCGGCACAGGCATGGAAGGCGTCGTTGCG CGCGACTCGGGTGCCGCGATCGCGGCACGCCGTTCGGGCGTGATCGACCAGATCGACGCGACCCGCGTCGTCATCCGCGC CACGGAAGATCTTGATCCGACCAAGTCGGGCGTCGATATCTACCGGCTGATGAAGTACCAGCGTTCCAACCAGTCGACCT GCATCAACCAGCGTCCGCTGGTGAAGGTCGGCGACATCGTCAAGAAGGGCGACATCATCGCCGACGGTCCGTCGACCGAT CTCGGCGAGCTGGCGCTCGGCCGCAATGTGCTCGTCGCGTTCATGCCGTGGAACGGCTACAACTTCGAAGACTCGATCCT GCTCTCCGAGCGGATCGTGAAGGAAGACGTGTTCACCTCAATTCATATCGAAGAATTCGAGGTGATGGCCCGCGACACCA AGCTCGGACCTGAGGAAATCACCCGCGACATTCCGAACGTCTCGGAAGAAGCGCTGAAGAACCTCGACGAAGCCGGTATC GTCTATATCGGCGCGGAAGTGCGCGCCGGCGACATCCTGGTCGGCAAGATCACGCCGAAGGGCGAAAGCCCGATGACGCC GGAAGAAAAGCTCCTGCGCGCCATCTTCGGCGAAAAGGCCTCCGACGTTCGCGACACCTCGCTGCGCGTTCCTCCGGGCG TGCAGGGCACGATCGTGGAAGTGCGCGTGTTCAACCGGCACGGCGTCGACAAGGACGAGCGTGCGTTGGCGATCGAACGG GAAGAGATCGAGCGTCTGGCCAAGGACCGCGACGACGAGCAGGCGATCCTGGACCGCAACGTCTACAACCGTCTTGCCGA GCTGCTCGAGGGGCGGCAGGGCATTGCCGGTCCGAAGGGCTTCAAGAAGGACACCAAGATCACCCGTGCGGTGCTCGAGG AGTACCCGAAGTCGCAGTGGTGGCTGTTCGCGTCGCCGAACGACAAGCTGATGGCCGAGATCGAGGCCATGCGGAAGCAG TACGACGAGTCGAAGAAGGGGCTCGAGCAGCGCTTCCTCGACAAGGTCGAGAAGCTTCAGCGCGGTGACGAATTGCCGCC CGGCGTGATGAAGATGGTCAAGGTCTTCGTCGCGGTGAAGCGCAAGATCCAGCCCGGCGACAAGATGGCCGGCCGCCATG GCAACAAGGGCGTGGTGTCGAAAATCGTGCCGATCGAGGACATGCCGTTCCTCGAAGACGGCACGCATGCCGACATCGTG CTCAATCCGCTCGGCGTGCCCTCGCGCATGAACGTCGGACAGATCCTCGAGACCCATCTCGGCTGGGCCTGCGCCGGCCT CGGCAAGCGTATCGGCCAGACGGTCGATGCTTACCTGTCGAAGCAGGACATCAAGCCGCTGAAGGAAACCTTGAAGAAGG TCTACGGCGAGGACGAGACGATCAAGTCGCTCAACGACAACGAGTTGATCGAGCTCGGCCACAATCTGAGCCGCGGCGTG CCGATCGCGACGCCGGTGTTCGACGGCGCCAAGGAAGCCGATATCGAGGAGATGCTCAAGCTTGCCGGTCTCGACGCTTC GGGTCAGTCGACCGTCTATGACGGCCGCACCGGCGATGCGTTCGATCGCAAGGTGACGGTGGGCTACATCTACATGCTCA AGCTGCACCATCTGGTCGACGACAAGATCCACGCGCGTTCGATCGGTCCGTACTCGCTCGTTACCCAGCAGCCGCTGGGC GGCAAGGCGCAGTTCGGTGGCCAGCGCTTCGGCGAAATGGAGGTGTGGGCGCTCGAGGCTTACGGCGCGGCGTACACGCT CCAGGAGATGCTGACGGTGAAGTCGGACGACGTCGCCGGCCGTACTAAGGTGTACGAGGCGATCGTGCGCGGCGACGACA CGTTCGAGGCCGGTATTCCGGAATCGTTCAACGTGCTGGTCAAGGAAATGCGCTCGCTCGGCCTCAACGTCGACCTGCAC AATTCCAAGGTGGGACCGGCGCCGACGTCGGAAGCGGCCGAGTAA Protein sequence : MAQQTFTGRKRVRKFFGHIKEVAEMPNLIEVQKASYDQFLMVDEPVGGRLDEGLQAVFRSVFPISDFSGTSMLEFVRYEF EQPKYDVDECRQRGMTFAAPLKVTLRLIVFDIDEETGAKSVKDIKEQDVYMGDIPLMTMNGTFIVNGTERVIVSQMHRSP GVFFDHDKGKTHSSGKLLFAARVIPYRGSWLDIEFDAKDIVYARIDRRRKIPVTSLMFALGLDGEAILSTFYKKILYKRT KEGWRVPFDANRFRGYSTINDLIDADTGKVVLEAGKKLTVRGARQMQEKGLKALRLSDEELVGNYLAEDLVNPKTGEIHA EAGEEITDKSMKALNEHGYKELPLLDIDHVNVGAYIRNTLAADKNMTREDALFDIYRVMRPGEPPTLDSAQAMFQSLFFD AERYDLSAVGRVKMNMRLDLDAPDTQRTLRKEDILSVIKTLVDLRDGKGEIDDIDHLGNRRVRSVGELMENQYRIGLLRM ERAIKERMSSVDIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEITHKRRLSALGPGGLTRERAGFEVRDVH PTHYGRICPIETPEGPNIGLINSLATFARVNKYGFVETPYRKVKDGRVTDEVVYLSAMEEGRYSVAQANVPIDAKGRFTE DLVVCRSSGTRDVVPMTPDKVDYMDVSPKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLVRAEAPFVGTGMEGVVA RDSGAAIAARRSGVIDQIDATRVVIRATEDLDPTKSGVDIYRLMKYQRSNQSTCINQRPLVKVGDIVKKGDIIADGPSTD LGELALGRNVLVAFMPWNGYNFEDSILLSERIVKEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEALKNLDEAGI VYIGAEVRAGDILVGKITPKGESPMTPEEKLLRAIFGEKASDVRDTSLRVPPGVQGTIVEVRVFNRHGVDKDERALAIER EEIERLAKDRDDEQAILDRNVYNRLAELLEGRQGIAGPKGFKKDTKITRAVLEEYPKSQWWLFASPNDKLMAEIEAMRKQ YDESKKGLEQRFLDKVEKLQRGDELPPGVMKMVKVFVAVKRKIQPGDKMAGRHGNKGVVSKIVPIEDMPFLEDGTHADIV LNPLGVPSRMNVGQILETHLGWACAGLGKRIGQTVDAYLSKQDIKPLKETLKKVYGEDETIKSLNDNELIELGHNLSRGV PIATPVFDGAKEADIEEMLKLAGLDASGQSTVYDGRTGDAFDRKVTVGYIYMLKLHHLVDDKIHARSIGPYSLVTQQPLG GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVAGRTKVYEAIVRGDDTFEAGIPESFNVLVKEMRSLGLNVDLH NSKVGPAPTSEAAE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 59 |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 59 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| S23_28700 | YP_005450190.1 | RNA polymerase beta subunit | NC_002516.2.881699.p | Protein | 0.0 | 60 |
| S23_28700 | YP_005450190.1 | RNA polymerase beta subunit | CP000675.2.gene392.p | Protein | 0.0 | 60 |
| S23_28700 | YP_005450190.1 | RNA polymerase beta subunit | CP000034.1.gene3741. | Protein | 0.0 | 59 |
| S23_28700 | YP_005450190.1 | RNA polymerase beta subunit | CP001138.1.gene4362. | Protein | 0.0 | 59 |
| S23_28700 | YP_005450190.1 | RNA polymerase beta subunit | NC_002695.1.914942.p | Protein | 0.0 | 59 |
| S23_28700 | YP_005450190.1 | RNA polymerase beta subunit | CP001918.1.gene250.p | Protein | 0.0 | 59 |
| S23_28700 | YP_005450190.1 | RNA polymerase beta subunit | NC_009085.4918494.p0 | Protein | 0.0 | 59 |
| S23_28700 | YP_005450190.1 | RNA polymerase beta subunit | NC_010400.5987325.p0 | Protein | 0.0 | 59 |
| S23_28700 | YP_005450190.1 | RNA polymerase beta subunit | NC_010611.6233925.p0 | Protein | 0.0 | 59 |
| S23_28700 | YP_005450190.1 | RNA polymerase beta subunit | NC_011595.7060572.p0 | Protein | 0.0 | 59 |
| S23_28700 | YP_005450190.1 | RNA polymerase beta subunit | NC_010410.6003841.p0 | Protein | 0.0 | 59 |
| S23_28700 | YP_005450190.1 | RNA polymerase beta subunit | NC_011586.7046027.p0 | Protein | 0.0 | 59 |
| S23_28700 | YP_005450190.1 | RNA polymerase beta subunit | NC_008702.1.4609796. | Protein | 0.0 | 59 |
| S23_28700 | YP_005450190.1 | RNA polymerase beta subunit | CP000647.1.gene4402. | Protein | 0.0 | 58 |
| S23_28700 | YP_005450190.1 | RNA polymerase beta subunit | CP002695.1.gene18.p0 | Protein | 0.0 | 58 |
| S23_28700 | YP_005450190.1 | RNA polymerase beta subunit | NC_011035.1.6448762. | Protein | 0.0 | 58 |
| S23_28700 | YP_005450190.1 | RNA polymerase beta subunit | CP004022.1.gene2794. | Protein | 0.0 | 57 |
| S23_28700 | YP_005450190.1 | RNA polymerase beta subunit | CP003583.1.gene2745. | Protein | 0.0 | 50 |
| S23_28700 | YP_005450190.1 | RNA polymerase beta subunit | AE016830.1.gene3155. | Protein | 0.0 | 50 |
