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Name : Spiaf_0548 (Spiaf_0548) Accession : YP_005474356.1 Strain : Spirochaeta africana DSM 8902 Genome accession: NC_017098 Putative virulence/resistance : Unknown Product : DNA-directed RNA polymerase subunit beta Function : - COG functional category : - COG ID : - EC number : - Position : 649172 - 652672 bp Length : 3501 bp Strand : + Note : PFAM: RNA polymerase Rpb2, domain 3; RNA polymerase Rpb2, domain 6; RNA polymerase beta subunit; RNA polymerase Rpb2, domain 2; RNA polymerase beta subunit external 1 domain; RNA polymerase Rpb2, domain 7; TIGRFAM: DNA-directed RNA polymerase, beta subuni DNA sequence : ATGTTCGATAGAACGCAGACCATTACACGAGAGACGGTTGGAGAAGGACGAGACCCGGTGGTGCAGCTGCCGGATCTCGT TGGTGTACAGCTGTCGTCTTACGAGCGCTTTCTGCAGCGTGAGAAGCTGTTGAACGGGCAGCCGGTAGATAAACAGGGTC TGGAAGAGGTTTTTCAAGCGATCTTCCCGATTGAGAGTCCGGCCGGCGACATGCGCCTTGAGTACGATCATTACTCGCTT GATGAAGCAAATATCAAGTTCAGCGAGGCAGAGTGCAAGCTGAAGGGACATACCTATGCGGTGCCGCTCAAGGCCCGGAT CAATCTTGTGTTCCTGGAAACGGGGGAGATCCGGCAGAAAGACATCTACATGGGCGATATCCCGCTCATGACCGATCGGG GCACCTTTATCATTAATGGTGCCGAGCGCGTCGTAGTCAGTCAGATTCATCGCTCGCCTGGTGTTATCTTCTCCCATGAG AAGGGCGTCTACAGCTCCCGGATAATTCCTTATCGGGGTTCCTGGCTCGAGTTCGAGATCGATCAGAAGAAAGAACTGAT CTATGCCAAGATCGATCGCAAGAAGCGTATCCTCGGTACACTGTTTCTGCGTGCTCTCGGCTTTGAAACCCGCGAGGCGT TGATCGATCTGTTCTACCAGAAGAAGACCATCAAGCTGTCGGACTCCCGCGCAGACAAAGAGCAGTATGTCGGGAATGTG CTGTCGAATGCGGTATACCTGGGCGAAGGGGATGAGCGTAAGAAGCTCTACCGGGCTGGTGACAAGCTGCATCCCCATGA TATCGACGAGCTGTTGCACTCGGGTATCAGCGAGGTGCAGATTATCGATACCGATCACCCTGATTCACTGCACTCTGATA TCATACTGAACTGTTTTGATCGCGAAGAATCAAAGTTTACTCACTCCGACAGCGATGGTGACGAGCCTACCCGTGAGGAG GCCCTTACGGCTGTCTACAGTGTGCTCATGCCTGGCGAGCCGATTACCCTGGAGGGGGCCGAGAAGGACTTTCAGTCCAT GTTTTTTACCTCGCGCCGCTACGATCTGGGGCGGGTTGGTCGCTACAAGCTGAACAAGAAGTTTGATTACGAAACCCCGA CAGAGGAGCATATCCTTACCAAGGAAGACATCGTAAATACGATGCACTACCTTATCAAGGTGTATATTGGCGAGTCTTCG GTGGATGATATCGACCATCTTGGTAACCGCCGTGTGCGTTCTGTTGGTGAATTGCTGGGTAACCAGCTTAAAACTGCTTT CAGCCGCATGGAGCGTATCGCCAAGGAGCGGATGTCGCTCAAGGATACCGACACCATCAAGCCGCAGGATCTGGCCTCGA TCAAGCCGATCGTTGCCGCGATCAAGGAGTTCTTCGGCAGTTCACAGCTCTCACAGTTCATGGATCAGGTGAATCCGCTT TCCGAGCTGACCCACAAGCGTCGCTTGAATGCCCTTGGCCCTGGCGGTCTTACCCGCGATCGTGCCGGTTTCGAGGTGCG TGATGTTCACTATACCCACTACGGGCGTATGTGTCCGATCGAGACCCCGGAAGGCCCGAATATCGGGCTGATCGTCAGCC TGGCTAACTACACCCGCGTGAACGACTACGGTTTCCTGGAGACCCCCTATCGCCGGGTTGTAGACGGTGTTGCAACCGAT CAGGTCGAGTATCTCTCGGCAATGGATGAAGAGAAATTCTATATTGCTCAGGCGAATGCCCCGCTGAACGATAAGGGGCG GTTCGAGTCGGATATGGTTTCGGTACGCCGGAACGGTGACTACACCACCAAGCCGCCAGAGGATATCCAGTATATGGATG TGTCGCCCAAGCAGGTTATTTCGGTTTCGGCTTCGCTAATTCCTTTCCTGGAGCATGACGATGCCAACCGTGCCCTGATG GGTTCAAACATGCAGCGTCAGGCGGTGCCGCTGGTATACCCTGAGCCGCCGCTGGTCGGTACCGGAATGGAGGGTAAGAC CGCCTATGATTCCGGCGTGGTGCAGCGCGCCAAACGGGCCGGGGTGGTAGAGTACGTAACCTCCGAGGTGATCCGGATAG CGCCGGATGGTGCCAAGAAGTCCGGTCAGCTTGACGAGTATCCATTGTTAAAGTATTCACGCACCAACCAGGACACCTGC TACAATCAGCGCCCGATCGTTACCCCGGGTCAGCATGTGGATGCCGGGGCGGTTATCGCCGACGGTCCCTCCACCTATCA GGGTGAGCTGGCGCTCGGGAAAAACATCCTGATCGGCTTTGTGCCCTGGAACGGCTACAACTACGAGGATGCTGTTCTTA TCTCCGAGAAGATCGTCAAAGAGGATGTCTTTACCTCGATTCACATCAAGGAATTCACCATTGATGTTCGAGAGACCAAG CTCGGGGTTGAAAAGCTGACCCGTGACATTCCGAATACCTCGGAAAAATCCCTGGACCAGCTGGATGAAGAAGGCATTAT CCGGGTTGGCGCCAAGGTTCAGTCCGGGAGTATTCTGGTTGGTAAGGTAACCCCCAAGTCTGAAAGTGAGACTACCCCGG AGTTCAAGCTGCTGAATTCGATTTTCGGGGAAAAGGCGAAAGAGGTTCGTGACAGTTCCCTCAAGATTCCGCACGGCTAT GACGGCACCGTAATCGATGTGCAGCGCCTGCGCCGCTCCGAGGGAGACGATCTTGCTCCCGGCGTCGAGCAGGTGGTAAA GGTGCTGGTGGCGACCAAGCGGAAGCTGAAGGAAGGGGACAAGATCGCCGGTCGCCACGGGAACAAGGGGGTAATAGCCC GGGTTCTTCCCGAGGAAGACATGCCGTATTTGCCGGATGGCACCCCGCTGGAGCTGTGTTTGAATCCGCTCGGGGTCCCT TCGCGAATGAACCTCGGCCAGCTGCTGGAGACCCAGCTCGGCTGGGCCGCAGCGGCCCAGAACAAGTGGTTTGCTACCCA TGTGTTCGAATCGGCTTCGGCTCAGGATGTAGCGCGGAAGCTGGAAGAGGCCGGGCTGCCGGGGACTTCCAAGACGGTCC TGTATGACGGTCGTACCGGCGAGAAGTTTGTAAACGAGGTTATGGTTGGCTACATGTATGTCATCAAGCTGAACCACCTG ATTGACGACAAGATGCACGCCCGTTCAACCGGTCCGTACTCGCTGGTTACCCAGCAGCCGCTTGGTGGTAAGGCCCAGTT TGGTGGTCAGCGACTGGGTGAGATGGAGGTATGGGCTCTTGAGGCCTATGGTGCCGCCAATACCCTGCAGGAGCTGTTGA CCATCAAGTCCGACGATATGAACGGTCGCGCCAGAATTTACGAGAGTATCGTTAAGGGTGAGCCAAGTACTCACGCCGGG GTTCCGGAATCCTTTAATGTTCTTGTTCAGGAGCTGCGAGGGCTGGCTCTCGATATGGCCATTTACGACTCCAAGGGTAA GCAGATACCGCTTACCGAGCGCGATGAAGAACTGATTAACCGTCAGGGCAGCAATTTCTAG Protein sequence : MFDRTQTITRETVGEGRDPVVQLPDLVGVQLSSYERFLQREKLLNGQPVDKQGLEEVFQAIFPIESPAGDMRLEYDHYSL DEANIKFSEAECKLKGHTYAVPLKARINLVFLETGEIRQKDIYMGDIPLMTDRGTFIINGAERVVVSQIHRSPGVIFSHE KGVYSSRIIPYRGSWLEFEIDQKKELIYAKIDRKKRILGTLFLRALGFETREALIDLFYQKKTIKLSDSRADKEQYVGNV LSNAVYLGEGDERKKLYRAGDKLHPHDIDELLHSGISEVQIIDTDHPDSLHSDIILNCFDREESKFTHSDSDGDEPTREE ALTAVYSVLMPGEPITLEGAEKDFQSMFFTSRRYDLGRVGRYKLNKKFDYETPTEEHILTKEDIVNTMHYLIKVYIGESS VDDIDHLGNRRVRSVGELLGNQLKTAFSRMERIAKERMSLKDTDTIKPQDLASIKPIVAAIKEFFGSSQLSQFMDQVNPL SELTHKRRLNALGPGGLTRDRAGFEVRDVHYTHYGRMCPIETPEGPNIGLIVSLANYTRVNDYGFLETPYRRVVDGVATD QVEYLSAMDEEKFYIAQANAPLNDKGRFESDMVSVRRNGDYTTKPPEDIQYMDVSPKQVISVSASLIPFLEHDDANRALM GSNMQRQAVPLVYPEPPLVGTGMEGKTAYDSGVVQRAKRAGVVEYVTSEVIRIAPDGAKKSGQLDEYPLLKYSRTNQDTC YNQRPIVTPGQHVDAGAVIADGPSTYQGELALGKNILIGFVPWNGYNYEDAVLISEKIVKEDVFTSIHIKEFTIDVRETK LGVEKLTRDIPNTSEKSLDQLDEEGIIRVGAKVQSGSILVGKVTPKSESETTPEFKLLNSIFGEKAKEVRDSSLKIPHGY DGTVIDVQRLRRSEGDDLAPGVEQVVKVLVATKRKLKEGDKIAGRHGNKGVIARVLPEEDMPYLPDGTPLELCLNPLGVP SRMNLGQLLETQLGWAAAAQNKWFATHVFESASAQDVARKLEEAGLPGTSKTVLYDGRTGEKFVNEVMVGYMYVIKLNHL IDDKMHARSTGPYSLVTQQPLGGKAQFGGQRLGEMEVWALEAYGAANTLQELLTIKSDDMNGRARIYESIVKGEPSTHAG VPESFNVLVQELRGLALDMAIYDSKGKQIPLTERDEELINRQGSNF |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 47 |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 47 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Spiaf_0548 | YP_005474356.1 | DNA-directed RNA polymerase subunit beta | AE000516.2.gene708.p | Protein | 0.0 | 55 |
| Spiaf_0548 | YP_005474356.1 | DNA-directed RNA polymerase subunit beta | CP004022.1.gene2794. | Protein | 0.0 | 48 |
| Spiaf_0548 | YP_005474356.1 | DNA-directed RNA polymerase subunit beta | CP001138.1.gene4362. | Protein | 0.0 | 48 |
| Spiaf_0548 | YP_005474356.1 | DNA-directed RNA polymerase subunit beta | CP000034.1.gene3741. | Protein | 0.0 | 48 |
| Spiaf_0548 | YP_005474356.1 | DNA-directed RNA polymerase subunit beta | NC_002695.1.914942.p | Protein | 0.0 | 48 |
| Spiaf_0548 | YP_005474356.1 | DNA-directed RNA polymerase subunit beta | CP001918.1.gene250.p | Protein | 0.0 | 48 |
| Spiaf_0548 | YP_005474356.1 | DNA-directed RNA polymerase subunit beta | CP000647.1.gene4402. | Protein | 0.0 | 48 |
| Spiaf_0548 | YP_005474356.1 | DNA-directed RNA polymerase subunit beta | NC_002516.2.881699.p | Protein | 0.0 | 48 |
| Spiaf_0548 | YP_005474356.1 | DNA-directed RNA polymerase subunit beta | NC_009085.4918494.p0 | Protein | 0.0 | 47 |
| Spiaf_0548 | YP_005474356.1 | DNA-directed RNA polymerase subunit beta | NC_010400.5987325.p0 | Protein | 0.0 | 47 |
| Spiaf_0548 | YP_005474356.1 | DNA-directed RNA polymerase subunit beta | NC_010611.6233925.p0 | Protein | 0.0 | 47 |
| Spiaf_0548 | YP_005474356.1 | DNA-directed RNA polymerase subunit beta | NC_011595.7060572.p0 | Protein | 0.0 | 47 |
| Spiaf_0548 | YP_005474356.1 | DNA-directed RNA polymerase subunit beta | NC_010410.6003841.p0 | Protein | 0.0 | 47 |
| Spiaf_0548 | YP_005474356.1 | DNA-directed RNA polymerase subunit beta | NC_011586.7046027.p0 | Protein | 0.0 | 47 |
