|
Name : RAM_40840 (RAM_40840) Accession : YP_005536092.1 Strain : Amycolatopsis mediterranei S699 Genome accession: NC_017186 Putative virulence/resistance : Virulence Product : multidrug ABC transporter ATPase/permease Function : - COG functional category : - COG ID : - EC number : - Position : 8741421 - 8745167 bp Length : 3747 bp Strand : + Note : COG1132 ABC-type multidrug transport system, ATPase and permease components DNA sequence : GTGACCGTCGCTCCGCCCCGCTCCCGTCAAGAGCTCCCACCCACCGAGACCGCCGGCTGGATCCGCCGGCTGTCCGCCGC GGCCTGGGAGCACCGTGTGCTCGTCGTGCTGTCGCTGCTCGCCGCCGCGTTCGGCGTCGGCGTGCAGGCCGCCAGCCCGT TGCTGGTGCGCACGGCGGTGGACGACGCGGTCGCCGGGCAGACCGGTGGCCTGCCCGGGATCGCCGTCTTCCTGGTCGCG CTGCAGCTGATCGCCTTCGGCACCGCGTTCGCGCGCCGCTACCTCGGCGGGAAGCTCGCCCTCGACGTGCAGCACGATCT GCGCCAGCGCGTCTTCAACGCCGTTTCGCGGCTGGACGGCGGCAAGCAGGACGCGCTGCGCACCGGCCAGGTCGCCTCGC GCGCGATTTCCGACCTGCAGCTGGTGACCGGGATCCTGATGCAGGTCCCGCTGTCCTTCGGCTCGGTGGTCTTCGCGCTG CTGTCGTTCGTCGCGATGCTGTGGCTGTCCCCGGTGCTGACGCTGATCGCGCTGGTCGTCACGCCCGCGGTCGGCATCAT CGTGGCGCGCAGCCGCAAGCGCCTCTTCCCGGCGACGTGGTCGGCGCAGCAGCGCGCGGCGGATGTCGCGCAGCAGGTCG AAGAGACCGTCACCGGCGTCCGGGTGGTCAAGGGCTTCGGCCAGGAGACGCGGGAAGTTTCGAAGCTGGAAGCGACCGCG CGCAAGTTGTTCGGCGAACGGCTTCGCGCGGCGAAGCTCTCGGCGGTCCCGACGGCGACCACCGCCGCCCTGCCCGCCGC CGGCCAGGTGGCCGTGCTCGGCATCGGCGGCGTCCTCGCGCTGAACGGGTCCATCACCCTCGGCACGTTCCTGGCCTTCG CCACCTACCTCGCAACGCTGATCGGCCCGGCCCGGATGCTGTCCGGCCTGGTCGTGCAGGCGCAGCTGACCCGCGCCGGC GCCGAGCGGGTGTACGAGCTGATCGACGCGCAGCCGGAGGTCGTCGACTCCCCCGACGCGCGCCCGCTACCGGAAGGGCC GCTGGGCGTGGAGCTCGACGGCGTCCGGTTCGGCTACACCCGCAGCGAACCGGTGCTGGCCGGTCTTTCGGTCACCGCGA ACCCGGGCGAAACCCTCGCACTGGTCGGCACGGCGGGCTCGGGCAAGTCGACGATTTCGTTGCTGCTGCCCCGGTTCTAC GACGTGCACGAGGGTGCGGTGCGGGTCGGCGGCCTCGACGTCCGGGACATCCCGCTGCGGCAGCTGCGGCAGGCGATCGG CGTGGTGTTCGAAGAGGCGTTCCTGTTCTCCTCCTCGATCCGGGACAACATCGCCTACGGCCGCCCGGACGCGAGCGAGG AGGAGATCGTCGCGGCGGCCAAAGCCGCGGAGGCGGACGGCTTCATCCGCGCGCTGCCGGACGGCTACGACACGCTGGTC GGCGAGCGCGGGCTGACCCTCTCGGGCGGCCAGCGGCAGCGGCTCGGGCTGGCCAGGGCCCTGATCACCGACCCGCGGAT CCTGGTGCTCGACGACGCGACCTCGGCCATCGACACCGTCACCGAAGCGGCGATCTACGACACCCTGCGCTCGGTGACCG CGGCCCGGACCACCCTGCTGATCGCCCACCGGCGCTCCACCCTCGCCCTGGCCGACCGGATCGCGGTACTGGACGAAGGC CGCGTCGTCGACGTCGGCACCGAGGCCGAGCTGATGGCGCGCTGCCCGCTGTTCCGCGAACTCGTGGCGGGCCCGGGCGA CGACGTCGAAGAGAAGCACCGCTGCGAAGGTCTGGACCGCGGTCCGGGCGGGGTCACGCCGTCGCTGTGGCCGCGTGACG AGAGCCGCGACGAGGTCGACGCACTGGCCGAAGCCGCGCGCCTGCGCAGTGGCGACCCGAACAGCAGCGGGTTCGTCGGC GGGGGCGGCGGGCTCGACGTGCCGCCGACACCGGAGCTGATCGAGGGCGTGCGCAAGCTCCCGGCCGCCACCGACGAGCC GCGGCTGCCCGGTGTGGACGTCACCGCGCCCGACCCGAAGTTCCGGCTGGCCGGGCTGCTGCGGCCGGTCCGCGGGCCGC TGGCCCTGGTGATCGGGCTGGTGGCGGCGGACGCGCTGGCGTCGATCGCGCTGCCCGGGCTGTACCAGTTCGGCGTCGAC CACGGGGTGCGGACCGGTGTCGAGTGGATGATCTGGCTGGCCGCCGGGATCGGCGCCGCGGTGATCGCGGCCGACTGGCT GGTGGTCTTCGCGCAGACGCGGCTGACGTCGCGGGTGGGCGAGACGGTGCTGTACGCGCTGCGCGTCCGCAGTTACGCGC ACCTGCAGCGGCTCGGGCTCGACTACTACGAGCGGGAGCTGTCCGGGAAGATCATGACCCGGATGACGACGGACGTCGAC GCGCTCTCGACGTTCCTGCAGACCGGGCTCGCCACCGCGGTGGTCAGCGCGCTGACGCTGGCCGGGATCACGGCCGCGCT GCTGGTCACCGACGCCGGGCTGGCGCTGTACGCGCTGGCGATGGTGCCGGTGCTGGCGGTGGCCACGGTGATCTTCCGGC GCTCGGCGTCGAAGGCGTACAACGAGGCCCGCGAGCGGGTCAGCGTCGTGAACGCGGACATGCAGGAGAACGTCAGCGGG CTGCGGGTCGCGCAGGCGTACACGCGTGAAGACCGTTCCGCGGAGGCGTTCGCCTCGCGCAGCGACGACTACCGGCGCTC GCGGCTGCGGGCCCAGCGGTACGTGGCGACGTACTTCCCGCTGGTGGCGCTGATGTCGGACCTGGCGACCACGACGGTGC TGGTGGCCGGGGCCAACCGCGTCTCGGCGGGCACGCTGTCGGCCGGCGTGCTGCTCGCGTTCCTGCTGTACCTGCAGCAG TTCTTCTCCCCGATCCAGCAGCTGTCGGCGGTGTTCGACGGCTACCAGCAGGCGAGCGTCGGCCTGAACCGCATCGGCGA CCTGCTGCGGACGCCGACGTCGGTGCCGGCGGCGGAGAAGGCGGTCGAGGTGCCGGCCCGGCTGCGCGGCGAAGTCTCGT TCAAGGAGGTCGAGTTCTCCTACACCGGCGCCGGGACGCCGGCGCTGGCGGAGTTCTCGCTGGACGTCGCGGCCGGCGAG ACGATCGCGCTCGTCGGCGCGACCGGCGCCGGGAAGTCGACGGCGGTGAAGCTGGTGGCGCGCTACTACGACGTCACCGG CGGCGAGGTCCGGATCGACGGCACGGACGTCCGCGAGTACGACCTGGCCGGCCTGCGGCGCCGGATGGGCGTGGTGCCGC AGGAGGCGCACCTGTTCTCGGGCACGGTGGCCGACAACGTCCGCTACGGCCGCCCCGCCGCGTCCGACGCGGAGGTCGAG GCGGCGGTCCGCGCGGTGGGCGCGCTGGACGGCGTCGCGGCCCTGCCCTCGGGCTTCCTGCAGCCGGTGGGCGAGCGCGG CCGCTCGCTGTCGGCGGGCCAGCGCCAGCTGGTGGCCCTGGCGAGGGCGGAGCTGGTGGACCCGGACGTCCTCCTCCTCG ACGAGGCCACGGCGGCCCTGGACCCCTCGACGGAGGCGGCGGTCCTCCGGGCCACGGAGACGGTGGCCCGCCGCCGCACG ACGTTCGTGGTCGCCCACCGCCTGGCGACGGCGGCCCGCGCCGACCGCATCGTGGTCCTGGACCACGGCGGCATCGTGGA AACCGGAACCCACGACGAGCTCCTGGCCGCCAACGGCCCCTACGCCCGCCTCTGGGCCCTCGGCTGA Protein sequence : MTVAPPRSRQELPPTETAGWIRRLSAAAWEHRVLVVLSLLAAAFGVGVQAASPLLVRTAVDDAVAGQTGGLPGIAVFLVA LQLIAFGTAFARRYLGGKLALDVQHDLRQRVFNAVSRLDGGKQDALRTGQVASRAISDLQLVTGILMQVPLSFGSVVFAL LSFVAMLWLSPVLTLIALVVTPAVGIIVARSRKRLFPATWSAQQRAADVAQQVEETVTGVRVVKGFGQETREVSKLEATA RKLFGERLRAAKLSAVPTATTAALPAAGQVAVLGIGGVLALNGSITLGTFLAFATYLATLIGPARMLSGLVVQAQLTRAG AERVYELIDAQPEVVDSPDARPLPEGPLGVELDGVRFGYTRSEPVLAGLSVTANPGETLALVGTAGSGKSTISLLLPRFY DVHEGAVRVGGLDVRDIPLRQLRQAIGVVFEEAFLFSSSIRDNIAYGRPDASEEEIVAAAKAAEADGFIRALPDGYDTLV GERGLTLSGGQRQRLGLARALITDPRILVLDDATSAIDTVTEAAIYDTLRSVTAARTTLLIAHRRSTLALADRIAVLDEG RVVDVGTEAELMARCPLFRELVAGPGDDVEEKHRCEGLDRGPGGVTPSLWPRDESRDEVDALAEAARLRSGDPNSSGFVG GGGGLDVPPTPELIEGVRKLPAATDEPRLPGVDVTAPDPKFRLAGLLRPVRGPLALVIGLVAADALASIALPGLYQFGVD HGVRTGVEWMIWLAAGIGAAVIAADWLVVFAQTRLTSRVGETVLYALRVRSYAHLQRLGLDYYERELSGKIMTRMTTDVD ALSTFLQTGLATAVVSALTLAGITAALLVTDAGLALYALAMVPVLAVATVIFRRSASKAYNEARERVSVVNADMQENVSG LRVAQAYTREDRSAEAFASRSDDYRRSRLRAQRYVATYFPLVALMSDLATTTVLVAGANRVSAGTLSAGVLLAFLLYLQQ FFSPIQQLSAVFDGYQQASVGLNRIGDLLRTPTSVPAAEKAVEVPARLRGEVSFKEVEFSYTGAGTPALAEFSLDVAAGE TIALVGATGAGKSTAVKLVARYYDVTGGEVRIDGTDVREYDLAGLRRRMGVVPQEAHLFSGTVADNVRYGRPAASDAEVE AAVRAVGALDGVAALPSGFLQPVGERGRSLSAGQRQLVALARAELVDPDVLLLDEATAALDPSTEAAVLRATETVARRRT TFVVAHRLATAARADRIVVLDHGGIVETGTHDELLAANGPYARLWALG |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| iroC | CAC43427.2 | ABC transport protein | Virulence | PAI III 536 | Protein | 8e-162 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| RAM_40840 | YP_005536092.1 | multidrug ABC transporter ATPase/permease | VFG1653 | Protein | 4e-162 | 41 |
