|
Name : secD (BPTD_1039) Accession : YP_005589229.1 Strain : Bordetella pertussis CS Genome accession: NC_017223 Putative virulence/resistance : Unknown Product : preprotein translocase subunit SecD Function : - COG functional category : - COG ID : - EC number : - Position : 1111977 - 1113857 bp Length : 1881 bp Strand : - Note : - DNA sequence : ATGAACCGCTATCCCCTCTGGAAATACATCACGGTCCTGGTTGCGGTCGTCATCGGCCTGCTCTATACCCTGCCCAACTT CTACGGCGAGTCCCCCGCCGTCCAGGTCTCGTCCGCCAAGGCGACGATCAAGGTCGACCAGGCCACGCTGGAGCAGGTCC AGCAGATCATCGAAAACGCCCAGTTGCCGGTCGACAGCGTCTACTACGAGCAGAACGGCACGCTGGGCACGGTGCGCGCG CGCTTTCCGTCCACCGACGTGCAGCTGCAGGCGCGCGACCTGATCGACCGCACGCTCAACACCGTGGCCGGCGACCCCCA CTACACCGTGGCGCTCAACCTGCTGCCCGCCTCGCCGCCCTGGATGCGGTCGCTGGGCTGGTTCGAGCCCAAGCCCATGT ACCTGGGCCTGGACCTGCGCGGCGGCGTGCACTTCCTGCTGCAGGTCGACATGCAGGGCGCCCTGACGGCGCGCTATGAC TCGCTGGTGGCCGACGTGCGCAGCGCGCTGCGCGACCAGAAGGCCGAAGTCGGCGCCATCGAGCGCTCGGGCCAGTCGGT CGTGGCCACTTTCGCCACCGCCGAACAACGCGACCGCGCCCGCGACGTGCTGCGCTCGCGCCTGCCCGACCTGCAGTTCA CCGAAACCAGCGACGGCGGCAAGCTGCAGCTGACGGGCATGCTCAACCCGGCCGCGGTCACCCGCGTGCAGGACACCGCC CTCAAGCAGAACATCAACACCCTGCACAACCGCATCAACGAGCTGGGCGTGGCCGAGCCGGTCATCCAGCAGCAAGGCGC CGACCGCATCATCGTGCAGCTGCCCGGCGTGCAGGACGTGGCCAAGGCCAAGGAGCTGCTGGGCCGCACCGCCACGCTCG AGATCCGCATGGTCGACGACAGCCCGGCGGCGCAATCGGCCCTGGCCGCCGGCAGCGTGCCGTTCGGCCTGGAGCGCTAC ACCGACCGCGACGGCCGCCCCCTGCTGGTGCGCCGCCAGGTGGTGCTGACCGGCGAAAACCTGCAGGACGCCCAGCCCGG CCGCGATGGCCAGACCCAGCAGCCGGCCGTGCACCTGACGCTGGACTCCAAGGGCGCGCGCATCTTCCGCGACGTCACGC GCGACAACATCGGCAAGCGCATGGCCATCCTGCTGTTCGAGAACGGCAAGGGCGAAGTCGTCACCGCGCCGGTCATCCGC AGCGAAATCGGCGGCGGCCAGGTGCAGATCTCGGGCAGCATGACCGCCGAGGAAGCCGCCGACACCGCGCTGCTGCTGCG CGCCGGCGCGCTGGCCGCGCCCATGTCCATCATCGAGGAGCGCACTATCGGCCCCAGCCTGGGCGCGGACAACATCGCCA AGGGTTTCTACTCGACGCTGTATGGCTTCATCGCGATCGCCATCTTCATCATCGTGTACTACCACCTGTTCGGCATCTTC TCGACCATCGGCCTGACGGTCAACGTGCTGCTGCTGCTGGCGCTGCTGTCGATGCTGCAGGCAACCCTGACCCTGCCCGG CATCGCGGCCATCGCCCTGACCCTGGGCATGGCCATCGACGCCAACGTGCTCATCAACGAGCGTATCCGCGAAGAGCTGC GCAACGGCGCCACGCCGCAACAGGCCATCCACCATGGCTTCGAGCGCGCGTGGGGCACCATCCTGGACTCCAACCTCACC ACGCTGATCGTCGGCCTGGCGCTGCTGGCGTTCGGCTCCGGCCCGATCCGCGGCTTTGCCGTGGTGCACTGCCTGGGTAT CGTCACCTCGATGTTCTCGTCGGTGGTGGGCGTGCGCGCGCTGGCCAACCTCTGGTACGGCCGCAAGAAGAAGCTGTCGA GCATTTCCATCGGCACCGTCTGGAAACCCAAGGCAAACTGA Protein sequence : MNRYPLWKYITVLVAVVIGLLYTLPNFYGESPAVQVSSAKATIKVDQATLEQVQQIIENAQLPVDSVYYEQNGTLGTVRA RFPSTDVQLQARDLIDRTLNTVAGDPHYTVALNLLPASPPWMRSLGWFEPKPMYLGLDLRGGVHFLLQVDMQGALTARYD SLVADVRSALRDQKAEVGAIERSGQSVVATFATAEQRDRARDVLRSRLPDLQFTETSDGGKLQLTGMLNPAAVTRVQDTA LKQNINTLHNRINELGVAEPVIQQQGADRIIVQLPGVQDVAKAKELLGRTATLEIRMVDDSPAAQSALAAGSVPFGLERY TDRDGRPLLVRRQVVLTGENLQDAQPGRDGQTQQPAVHLTLDSKGARIFRDVTRDNIGKRMAILLFENGKGEVVTAPVIR SEIGGGQVQISGSMTAEEAADTALLLRAGALAAPMSIIEERTIGPSLGADNIAKGFYSTLYGFIAIAIFIIVYYHLFGIF STIGLTVNVLLLLALLSMLQATLTLPGIAAIALTLGMAIDANVLINERIREELRNGATPQQAIHHGFERAWGTILDSNLT TLIVGLALLAFGSGPIRGFAVVHCLGIVTSMFSSVVGVRALANLWYGRKKKLSSISIGTVWKPKAN |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| secD | AAT96103.1 | SecD | Not tested | T-PAI | Protein | 1e-91 | 42 |
| secD | AAT96179.1 | SecD | Not tested | T-PAI | Protein | 5e-92 | 42 |
| secD | AAT96039.1 | SecD | Not tested | T-PAI | Protein | 4e-92 | 42 |
| secD | AAT96067.1 | SecD | Not tested | T-PAI | Protein | 4e-92 | 42 |
| secD | AAT96119.1 | SecD | Not tested | T-PAI | Protein | 4e-92 | 42 |
