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Name : Zmob_0557 (Zmob_0557) Accession : YP_005620853.1 Strain : Zymomonas mobilis ATCC 10988 Genome accession: NC_017262 Putative virulence/resistance : Unknown Product : DNA-directed RNA polymerase subunit beta Function : - COG functional category : - COG ID : - EC number : 2.7.7.6 Position : 650980 - 655185 bp Length : 4206 bp Strand : - Note : TIGRFAM: DNA-directed RNA polymerase, beta subunit; KEGG: zmn:Za10_0543 DNA-directed RNA polymerase, beta subunit; PFAM: RNA polymerase Rpb2 domain 6; RNA polymerase Rpb2 domain 3; RNA polymerase Rpb2 domain 2; DNA-directed RNA polymerase, beta subunit, e DNA sequence : ATGGGGCGGCTGGTTGTGAAGCGTGAGGATTATATGGCGACCAAGGCATCTGCTATCGGCCACGCGAGTGTAAAAAAACG TATTCGCAAAATGTTTGGTAATATCCATGAAGTTGTGGATATGCCGAACCTTATCGAAGTTCAGCGTGATAGTTACGAAA ACTTTCTGCGTTCTCGCCCTGAGGACGGATATGTTTCAGGGTTGGAAAAAACTCTGCGTTCTGTTTTTCCGATCCGTGAT TTCGGCGGTGTAGCAGAACTGGATTTTGTCCAGTATGAGTTGGAAGAACCAAAGTTTGACGTCGATGAATGCCGTCAGCG GGGCATTACCTATGCGGCTCCGATGCGGGTTACCTTGCGTCTGATCGTATTTGAAGTTGATCCTGACACGGAAACGCGTT CTGTTCTCGATATTAAAGAGCAGGATGTCTATATGGGCGACATGCCGCTCATGACGCGGAACGGCACCTTCTTTATCAAT GGTACCGAGCGCGTTATCGTCAGCCAGATGCACCGTAGTCCGGGTGTTCTGTTTGACCATGATAAAGGCAAAACCCATTC TTCCGGTAAATTCCTGTTTGCCGCGCGCGTTATTCCTTATCGTGGTTCATGGTTGGATTTCGAATTTGACGCGAAAGATA TCGTCAATGTTCGTATCGACCGTAAACGCAAATTGCCGGTCACGACCCTGCTTTATGCTTTGGGTTTGAATGCCGAACAA ATCCTGCACCATTTCTATAACACGATCACTTTTGTGCGTGGTGATGGCGGCTGGAAAGTGCCTTATGTCGCTGAAAGCTG GCGTGGACGGAAGCCGTTCTTTGACATCATCAATGGCGATACCGGTGAAGTTGTTTTCCCTGCCGGACAGAAGATTTCGC CCCGCGCTGCCAATAAGGCTGGCCGCGATGGCCTGGAAACCTTGCTGATTCCGACTGAAGAAATCTACGGTCATTATGCC GCTTATGATGTTATCGATGAATCAACGGGTCGTATCTGGATTGAAGCGGGCGACGAAGTAACGCCAGAAAATCTGGAATT GCTGGATAATGCCGGTGTCGCAACGCTTGAGTTGTTGGATATCGACCATGTTTCCACCGGTCCTTGGATCCGTAACACTT TGAAAGCCGATAAAGCTGAAGATCGCGATCATGCTTTGGCTGAAATCTATCGGGTAATGCGTCCTGGTGAGCCGCCAACG AAGGAAACCGCAGAAGCGCTTTTCTATGGCTTGTTCTTTGATCCAGAACGCTATGACCTTTCGGCTGTCGGTCGCGTCAA GCTGAATATGCGCCTTGATCTCGATTGTCCTGATACGGTTACGACCTTGCGAGCAGAAGATATTCTGGCCGTTGTGAAAA CGCTGGTCGATCTGAAAGACGGCAAGGGCGAAGTCGATGATATCGATAACCTTGGTAACCGTCGCGTCCGTTCAGTCGGT GAGCTGTTAGAAAATCAGTATCGTGTTGGTCTGTTGCGGATGGAACGCGCTGTTAAAGAGCGTATGTCCTCTGTTGACGT TTCGACCGTCATGCCAAATGATCTGATCAACGCCAAACCGGCGGTGGCTGCGGTTCGCGAATTCTTCGGTTCTTCGCAGC TGTCCCAGTTTATGGATCAGACCAATCCCCTTTCCGAAGTCACGCATAAGCGTCGTGTTTCGGCTTTGGGCCCGGGTGGT CTTACCCGTGAGCGTGCAGGCTTTGAAGTCCGAGATGTCCATCCGACCCATTATGGTCGTATCTGCCCAATTGAAACGCC TGAAGGCCCGAATATTGGTCTGATTAACTCTCTTGCTACCTTTAGCCGTATTAACAAATACGGTTTTATCGAAACGCCTT ATCGTAAGGTTGTCGATCACAAGGTAACAAATGAAGTTATCTACCTCTCTGCGATGGAAGAAAGCCGCTATACGGTGGCT CAGGCCAACGCAGAATTGGACGCAGAAGGTCATTTCGTCGAAGAACTGGTTTCTGCTCGTGAAGCCGGTGAATTTTTGAT GGCACCTCGCGAACAGATCACTTTGATGGACGTTAGCCCGAAACAGTTGGTTTCGGTCGCTGCCTCCTTGATCCCATTCC TTGAAAACGATGACGCTAACCGCGCTTTGATGGGTTCCAACATGCAACGTCAGGCCGTGCCTTTGGTACGTGCTGAAGCG CCGTTTGTTGGCACCGGTATGGAAGAAACGGTTGCTCGCGATTCTGGAGCTGCGATTTCGGCACGCCGTGCTGGTATCGT CGATCAGGTCGATGCTTCTCGTATTGTTATCCGCACCACGGGTGAAATCGAAGCCGGTAAACCCGGTGTCGATATTTATC GCTTGATGAAATTCCAGCGTTCTAACCAGTCAACCTGCATTAACCAGCGTCCGTTGGTCAGCGTCGGTGACTATGTGAAT GCCGGTGACGTTTTGGCTGATGGCCCGTCCACGGAATTGGGTGAACTGGCATTGGGGCGGAACGTACTCGTCGCCTTTAT GCCGTGGAATGGTTACAACTACGAAGATTCCATCCTGATTTCCGAACGGATTGTGAAAGACGACGTCTTTACCTCGATTC ATATTGATGAATTCGAAGTGATGGCTCGTGATACCAAGCTGGGGCCGGAAGATATCACACGTGATATTCCGAATGTCGGT GAGGATGCTCTCCGCAATTTGGATGAAGCGGGTATCGTTTACATCGGTGCAGAAGTTCAGCCGGGCGACATTTTGGTCGG TAAGATCACGCCAAAGGGTGAAAGCCCGATGACGCCGGAAGAAAAGTTGTTGCGGGCGATCTTTGGTGAAAAAGCCTCGG ATGTTCGTGATACCTCTTTGCGTCTGCCTCCGGGTGTTGCTGGGACGATTGTTGATGTTCGCGTCTTTAACCGTCATGGT GTCGACAAAGACGAACGCGCCATGGCTATTGAGCGCGAAGAAATCGAGCGTCTGACGAAAGATCGTGAAGACGAGCGGGC TATTCTAAATCGGGCAACCTATGCTCAGCTTCAGGAAAAACTGCTTGGTCAGACGGTAGCCGCTGCGCCTTATAAGCATA TCGTTAAGGGTGCCAGAATCGATATCGAGACGCTGGCTTCTGTCGAACCGCATAAATGGTTCAAATTCGCTGTTGAAGAT GATGCCCGCCAGGCAGAATTGGAAGCGATCAAGAACCAGTATGACAGTGCAGATGAAGCTATTCGGAAGCGCTTTGAAGA TCGCGTTGAAAAAGCACAGCGTGGTGACGAGTTACCGCCAGGCGTCTTGAAAATGGTCAAGGTCTTTGTTGCCGTGAAGC GTAAGCTTCAGCCAGGTGATAAGATGGCCGGTCGTCATGGTAACAAGGGTGTTATCAGTCGTATTCTGCCTGCCGAAGAC ATGCCGTTCCTTGCTGATGGAACGCCGGTTGATATCGTTCTGAACCCGTTAGGTGTGCCTAGCCGTATGAATATCGGACA GATATTCGAGACGCATTTAGGTTGGGCTGCGCGTGGTCTTGGGGCGAAAGTCCGGACAGCTTTGGAAGAATGGCGCGAAG CTAATGTCGACCGCTATGAATGGGATTTCTCACCACCAGAAGTTGTCAGAGAACGGATGATTGAAGTCTATGGCGAAAAA TATGCCGAAGACATCAAGAGCCGTGAAGACAGAGAAATCGTCGAAATGGCGGGTCTGTTAAGAAATGGTGTGCCGATGGC AACGCCAGTCTTTGATGGTGCCAAGCCGGAAGATATTTCTGAAATGCTGAATTTGGCTGGTCTGGATGACTCTGGACAGG TTGAATTATATGATGGACGGACGGGTGAGCAATTCGATCGAAAGGTGACTGTCGGCTATATTTATATGCTGAAATTGCAC CATTTGGTTGATGACAAAATCCATGCTCGTTCCATCGGCCCCTACAGCCTTGTCACCCAGCAGCCGTTGGGCGGTAAAGC ACAGTTCGGTGGTCAGCGCTTTGGTGAAATGGAAGTCTGGGCATTGCAGGCTTATGGTGCTGCTTATACCTTGCAGGAAA TGTTGACCGTTAAGTCAGATGACGTTGTCGGTCGTACCAAGGTTTACGAAGCTATCGTCAAGGGTGATGATACTTTCGAG GCCGGTATTCCTGAAAGCTTCAACGTGCTTGTCAAGGAAATGCATAGTCTGGGTCTGAATGTCGAGCTGAAAACCTCCAA GGCAAAAGACGAAGACGATAGCAGTTTTCAGGTAGCCGCTGAATAG Protein sequence : MGRLVVKREDYMATKASAIGHASVKKRIRKMFGNIHEVVDMPNLIEVQRDSYENFLRSRPEDGYVSGLEKTLRSVFPIRD FGGVAELDFVQYELEEPKFDVDECRQRGITYAAPMRVTLRLIVFEVDPDTETRSVLDIKEQDVYMGDMPLMTRNGTFFIN GTERVIVSQMHRSPGVLFDHDKGKTHSSGKFLFAARVIPYRGSWLDFEFDAKDIVNVRIDRKRKLPVTTLLYALGLNAEQ ILHHFYNTITFVRGDGGWKVPYVAESWRGRKPFFDIINGDTGEVVFPAGQKISPRAANKAGRDGLETLLIPTEEIYGHYA AYDVIDESTGRIWIEAGDEVTPENLELLDNAGVATLELLDIDHVSTGPWIRNTLKADKAEDRDHALAEIYRVMRPGEPPT KETAEALFYGLFFDPERYDLSAVGRVKLNMRLDLDCPDTVTTLRAEDILAVVKTLVDLKDGKGEVDDIDNLGNRRVRSVG ELLENQYRVGLLRMERAVKERMSSVDVSTVMPNDLINAKPAVAAVREFFGSSQLSQFMDQTNPLSEVTHKRRVSALGPGG LTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFSRINKYGFIETPYRKVVDHKVTNEVIYLSAMEESRYTVA QANAELDAEGHFVEELVSAREAGEFLMAPREQITLMDVSPKQLVSVAASLIPFLENDDANRALMGSNMQRQAVPLVRAEA PFVGTGMEETVARDSGAAISARRAGIVDQVDASRIVIRTTGEIEAGKPGVDIYRLMKFQRSNQSTCINQRPLVSVGDYVN AGDVLADGPSTELGELALGRNVLVAFMPWNGYNYEDSILISERIVKDDVFTSIHIDEFEVMARDTKLGPEDITRDIPNVG EDALRNLDEAGIVYIGAEVQPGDILVGKITPKGESPMTPEEKLLRAIFGEKASDVRDTSLRLPPGVAGTIVDVRVFNRHG VDKDERAMAIEREEIERLTKDREDERAILNRATYAQLQEKLLGQTVAAAPYKHIVKGARIDIETLASVEPHKWFKFAVED DARQAELEAIKNQYDSADEAIRKRFEDRVEKAQRGDELPPGVLKMVKVFVAVKRKLQPGDKMAGRHGNKGVISRILPAED MPFLADGTPVDIVLNPLGVPSRMNIGQIFETHLGWAARGLGAKVRTALEEWREANVDRYEWDFSPPEVVRERMIEVYGEK YAEDIKSREDREIVEMAGLLRNGVPMATPVFDGAKPEDISEMLNLAGLDDSGQVELYDGRTGEQFDRKVTVGYIYMLKLH HLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALQAYGAAYTLQEMLTVKSDDVVGRTKVYEAIVKGDDTFE AGIPESFNVLVKEMHSLGLNVELKTSKAKDEDDSSFQVAAE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 59 |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 59 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Zmob_0557 | YP_005620853.1 | DNA-directed RNA polymerase subunit beta | CP001918.1.gene250.p | Protein | 0.0 | 60 |
| Zmob_0557 | YP_005620853.1 | DNA-directed RNA polymerase subunit beta | NC_002695.1.914942.p | Protein | 0.0 | 60 |
| Zmob_0557 | YP_005620853.1 | DNA-directed RNA polymerase subunit beta | CP001138.1.gene4362. | Protein | 0.0 | 60 |
| Zmob_0557 | YP_005620853.1 | DNA-directed RNA polymerase subunit beta | CP000034.1.gene3741. | Protein | 0.0 | 60 |
| Zmob_0557 | YP_005620853.1 | DNA-directed RNA polymerase subunit beta | CP000647.1.gene4402. | Protein | 0.0 | 60 |
| Zmob_0557 | YP_005620853.1 | DNA-directed RNA polymerase subunit beta | NC_002516.2.881699.p | Protein | 0.0 | 60 |
| Zmob_0557 | YP_005620853.1 | DNA-directed RNA polymerase subunit beta | CP000675.2.gene392.p | Protein | 0.0 | 60 |
| Zmob_0557 | YP_005620853.1 | DNA-directed RNA polymerase subunit beta | CP004022.1.gene2794. | Protein | 0.0 | 59 |
| Zmob_0557 | YP_005620853.1 | DNA-directed RNA polymerase subunit beta | NC_009085.4918494.p0 | Protein | 0.0 | 59 |
| Zmob_0557 | YP_005620853.1 | DNA-directed RNA polymerase subunit beta | NC_010400.5987325.p0 | Protein | 0.0 | 59 |
| Zmob_0557 | YP_005620853.1 | DNA-directed RNA polymerase subunit beta | NC_010611.6233925.p0 | Protein | 0.0 | 59 |
| Zmob_0557 | YP_005620853.1 | DNA-directed RNA polymerase subunit beta | NC_011595.7060572.p0 | Protein | 0.0 | 59 |
| Zmob_0557 | YP_005620853.1 | DNA-directed RNA polymerase subunit beta | NC_010410.6003841.p0 | Protein | 0.0 | 59 |
| Zmob_0557 | YP_005620853.1 | DNA-directed RNA polymerase subunit beta | NC_011586.7046027.p0 | Protein | 0.0 | 59 |
| Zmob_0557 | YP_005620853.1 | DNA-directed RNA polymerase subunit beta | NC_011035.1.6448762. | Protein | 0.0 | 58 |
| Zmob_0557 | YP_005620853.1 | DNA-directed RNA polymerase subunit beta | CP002695.1.gene18.p0 | Protein | 0.0 | 58 |
| Zmob_0557 | YP_005620853.1 | DNA-directed RNA polymerase subunit beta | NC_008702.1.4609796. | Protein | 0.0 | 58 |
