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Name : lysS (HPV225_0198) Accession : YP_005763143.1 Strain : Helicobacter pylori v225d Genome accession: NC_017355 Putative virulence/resistance : Virulence Product : lysyl-tRNA synthetase Function : - COG functional category : - COG ID : - EC number : 6.1.1.6 Position : 177598 - 179103 bp Length : 1506 bp Strand : + Note : - DNA sequence : ATGTTTTCTAACCAATACATCCAACAACGCATCCATAAAGCCAACAGCTTGAGAGAAGAAGGGAAAAACCCTTATAAAAA TGGCTTGAAACGAAGCCTTACAAACGCCGCTTTTTTAGAAAAATACGCTTATGTTAAGGATTTAGAAGAGCCTAAAGACA AGGAAAAATGCGAGAGTATTGTAGGGAGGGTCAAGCTTTTGCGCTTAATGGGTAAGGCTTGTTTTATTAAAATTGAAGAT GAAAGCGCGATTTTGCAAGCTTATGTTTCGCAAAATGAATTGAATGATGAATTTAAAAGCCTGAAAAAGCATTTAGAAGT GGGCGATATTGTGTTGGTGAAAGGTTTCCCTTTTGCTACCAAAACCGGTGAATTGAGCGTTCATGCATTAGAATTTCATA TTTTAAGCAAAACCATTGTGCCTTTGCCTGAAAAATTCCATGGACTGAGCGATATAGAATTGCGTTACCGCCAGCGCTAT TTGGATTTGATAGTCAATCCTAGCGTTAAAGATGTGTTTAAAAAACGCAGTTTGATTGTTTCTAGCGTGCGGAAATTCTT TGAAATGGAAGGGTTTTTAGAAGTGGAAACCCCCATGATGCACCCCATTCCTGGCGGGGCGAACGCAAGGCCTTTTATCA CTTACCATAACGCTTTAGAAATTGAAAGGTATTTAAGAATCGCTCCAGAATTATACCTCAAACGCTTGATTGTGGGGGGT TTTGAAGCGGTGTTTGAAATCAATCGCAATTTCAGGAATGAGGGCATGGATCACAGCCATAACCCCGAATTTACGATGAT TGAGTTTTATTGGGCGTATCACACTTATGAAGATTTGATTGAACTCAGTAAGAGGCTGTTTGACTACTTGCTAAAGACTT TGAACTTACCTTCAAAAATCATTTATAACGATATGGAAGTGGATTTCAACCAAACGAGCGTGATTTCCTATTTGGACGCT TTAGAAACGATAGGGGGCATTAGTAAGGATATTTTAGAAAAAGAAGACAGGCTTTTGGCTTATTTGTTAGAACAAGGCAT CAAAGTAGAGCCAAATCTCACTTATGGCAAATTGCTCGCTGAAGCGTTTGATCATTTTGTAGAGCACCAGCTCATTAACC CCACTTTTGTAACCCAATACCCCATTGAGATTAGCCCTTTAGCCAGACGCAACGATAGTAACCCTAATATTGCTGACAGG TTTGAATTGTTTATTGCAGGAAAAGAAATCGCTAACGGCTTTAGCGAGTTGAACGATCCTTTAGATCAATTAGAACGCTT TAAAAATCAAGTGGCTGAAAAAGAAAAAGGCGATGAAGAAGCCCAATACATGGATGAAGATTATGTGTGGGCGTTAGCCC ATGGAATGCCCCCCACTGCAGGGCAAGGCATAGGCATTGATAGATTAGTGATGCTACTCACTGGAGCTAAAAGCATTAAA GATGTGATTTTATTCCCAGCGATGCGTCCTGTTAAAAACGATTTTAATGTGGAGAGTGAAGAATAA Protein sequence : MFSNQYIQQRIHKANSLREEGKNPYKNGLKRSLTNAAFLEKYAYVKDLEEPKDKEKCESIVGRVKLLRLMGKACFIKIED ESAILQAYVSQNELNDEFKSLKKHLEVGDIVLVKGFPFATKTGELSVHALEFHILSKTIVPLPEKFHGLSDIELRYRQRY LDLIVNPSVKDVFKKRSLIVSSVRKFFEMEGFLEVETPMMHPIPGGANARPFITYHNALEIERYLRIAPELYLKRLIVGG FEAVFEINRNFRNEGMDHSHNPEFTMIEFYWAYHTYEDLIELSKRLFDYLLKTLNLPSKIIYNDMEVDFNQTSVISYLDA LETIGGISKDILEKEDRLLAYLLEQGIKVEPNLTYGKLLAEAFDHFVEHQLINPTFVTQYPIEISPLARRNDSNPNIADR FELFIAGKEIANGFSELNDPLDQLERFKNQVAEKEKGDEEAQYMDEDYVWALAHGMPPTAGQGIGIDRLVMLLTGAKSIK DVILFPAMRPVKNDFNVESEE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAD66193.1 | putative lysil-tRNA synthetase LysU | Not tested | PAI III 536 | Protein | 7e-106 | 50 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| lysS | YP_005763143.1 | lysyl-tRNA synthetase | VFG1668 | Protein | 4e-106 | 50 |
