|
Name : rpoB (CTDEC_0315) Accession : YP_005811367.1 Strain : Chlamydia trachomatis D-EC Genome accession: NC_017434 Putative virulence/resistance : Unknown Product : DNA-directed RNA polymerase subunit beta Function : - COG functional category : - COG ID : - EC number : 2.7.7.6 Position : 354703 - 358461 bp Length : 3759 bp Strand : - Note : - DNA sequence : ATGTTCAAGTGCCCGGAGCGGGTCAGCATCAAAAAGAAAGAAGATATTTTAGATCTTCCTAATCTTGTCGAAGTTCAAAT CAAGTCGTATAAGCAGTTTCTTCAAATCGGGAAGCTTGCTGAAGAGCGAGAAAACATTGGTTTAGAAGAAGTCTTCAGAG AAATTTTCCCTATCAAGTCTTATAATGAAGCTACGATTTTAGAGTACCTCTCTTATAACTTAGGAGTGCCCAAATACTCC CCAGAAGAGTGTATTCGTCGGGGAATCACCTATAGTGTTACTTTAAAGGTTCGTTTCCGTTTAACTGATGAAACGGGGAT TAAAGAAGAAGAAGTCTATATGGGAACCATCCCCATCATGACTGATAAGGGAACCTTTATTATTAATGGGGCAGAGAGAG TCGTTGTTTCTCAAGTCCACCGTTCTCCAGGAATCAATTTTGAACAAGAAAAACATTCTAAAGGAAATGTTTTATTTTCT TTTAGAATTATTCCTTATCGAGGAAGTTGGTTAGAAGCTGTCTTCGACATTAATGACCTTATCTATATCCATATTGATAG GAAAAAACGTCGCAGAAAGATTTTAGCTATGACGTTTATCCGAGCTTTAGGATATTCAACAGATGCAGATATTATTGAAG AGTTCTTTTCTGTAGAGGAGCGTTCCTTACGTTTAGAGAAGGATTTTGTCGCGTTAGTTGGTAAAGTTTTAGCTGATAAC GTAGTTGATGCGGATTCTTCATTAGTTTACGGGAAAGCTGGAGAGAAGCTAAGTACTGCTATGCTAAAACGCATCTTAGA TGCGGGAGTCCAATCTTTGAAGATTGCTGTTGGCGCAGATGAAAATCACCCAATTATTAAGATGCTCGCAAAAGATCCTA CGGATTCTTACGAAGCTGCTCTTAAAGATTTTTATCGCAGATTACGACCAGGAGAGCCTGCAACTTTAGTTAATGCTCGA TCCACAATTATGCGCTTATTCTTCGATGCTAAACGCTATAATTTAGGCCGCGTTGGACGTTATAAATTAAATAAAAAATT AGGATTCCCATTAGACGACGAAACATTATCTCAAGTGACTTTGAGAAAAGAAGATGTTATCGGCGCGTTGAAATATTTGA TTCGTTTGCGAATGGGCGATGAGAAGACATCTATCGATGATATTGACCATTTGGCAAACCGACGAGTTCGCTCTGTTGGA GAACTAATTCAGAATCACTGTCGTTCTGGATTGGCTAGAATGGAAAAGATCGTTCGAGAAAGAATGAATCTCTTTGATTT CTCTTCTGATACCCTAACTCCAGGAAAGATTATTTCTGCTAAAGGGTTAGTCAGTGTCCTGAAAGATTTCTTCAGCCGTT CTCAATTATCTCAGTTTATGGATCAGACAAACCCTGTCGCAGAATTGACGCACAAGCGTCGTCTGTCAGCATTAGGACCT GGGGGATTGAATAGAGAAAGAGCTGGGTTTGAAGTTCGAGACGTTCACGCAAGCCACTATGGTAGAATTTGTCCAATTGA GACTCCTGAAGGACCAAACATTGGGTTGATTACTTCACTGTCTTCCTTTGCTAAGATCAATGAATTTGGATTCATAGAGA CTCCTTATCGTGTCGTGCGCGATGGCATCGTGACAGATGAAATTGAGTATATGACAGCAGATGTTGAAGAAGAGTGTGTC ATTGCTCAGGCTTCTGCGGAGCTCGATGAGTATGATATGTTTAAAACTCCCGTATGCTGGGCTAGATACAAAGGAGAGGC TTTTGAAGCCGACACAAGTACGGTTACGCATATGGACGTTTCTCCAAAACAGCTGGTATCTGTGGTTACGGGGCTGATTC CTTTCTTGGAACACGACGATGCTAACCGAGCTCTTATGGGATCGAACATGCAACGGCAGGCTGTACCATTATTGAAAACG GAAGCTGCTATTGTTGGAACTGGATTAGAAGGGCGTGCTGCCAAAGATTCTGGAGCTATTATTGTGGCTCAGGAAGATGG GGTAGTCGAATACGTAGATAGCTATGAGATTGTCGTAGCGAAGAAGAATAATCCAACGCTTAAGGATCGTTATCAGCTTA AAAAATTCTTAAGATCCAACTCCGGAACATGCATCAACCAAACTCCTTTGTGTTCTGTGGGAGATGTGGTTACGCATGGA GATGTTTTAGCGGATGGCCCAGCAACCGATAAAGGGGAATTGGCTCTTGGTAAAAACGTATTAGTAGCCTTCATGCCTTG GTACGGGTATAACTTCGAAGATGCGATTATCATCTCCGAGAGGTTGATTAAACAAGATGCGTACACTTCTATTTACATAG AAGAATTTGAGTTAACAGCTCGAGATACAAAACTCGGTAAAGAAGAAATTACTAGAGATATTCCTAACGTTTCTGAAGAG GTTTTGGCAAATCTCGGAGAGGATGGTGTCGTCCGTATTGGGGCTGAAGTCAAGCCGGGAGATATTCTTGTCGGTAAAAT CACTCCGAAATCTGAGACGGAACTAGCTCCTGAAGAGCGTTTGTTGCGAGCTATTTTTGGAGAGAAGGCGGCGGACGTAA AAGATGCCTCTCTAACGGTTCCTCCTGGTACAGAAGGAGTCGTAATGGATGTCAAAGTATTCAGCAGAAAGGATCGCTTG TCCAAGAGCGATGATGAACTGGTTGAAGAAGCTGTGCATCTTAAGGATCTACAGAAAGAATATAAGAGTCAGTTAGCTCA ATTGAAAGTAGAACATAGAGAGAAACTGGGGGCTCTATTGCTCAATGAAAAAGCTCCTGCAGCGATTATACACCGTCGTT CGGCAGATATTTTGGTTCAAGAAGGTGCTATTTTTGATCAAGAGACTATCGAACTCTTAGAAAGAGAGTCGCTAGTTGAT TTGCTGATGGCTCCTTGTGACATGTATGATGTTTTGAAAGATATTCTTTCTAGCTATGAAACAGCTGTTCAGCGTTTGGA AGTCAATTATAAAACCGAAGCTGAGCACATAAAAGAAGGTGATGCTGACTTAGATCATGGAGTTATCCGACAAGTTAAAG TTTACGTGGCTTCCAAGCGAAAACTTCAAGTTGGGGATAAAATGGCTGGACGTCACGGAAACAAGGGAGTGGTTTCCAAG ATTGTTCCAGAAGCAGACATGCCTTTCTTAGCTAACGGTGAAACAGTACAGATGATTTTGAACCCGTTAGGGGTGCCTTC TCGAATGAACCTTGGACAGGTTTTAGAGACACATTTAGGATATGCTGCAAAAACTGCAGGTATCTATGTGAAAACTCCGG TCTTTGAAGGGTTCCCAGAGTCTCGTATTTGGGATATGATGATAGAGCAGGGATTGCCCGAAGATGGTAAGTCTTACCTA TTTGATGGTAAAACCGGAGAGCGTTTCGATAGCAAAGTGGTCGTTGGATACATCTACATGTTGAAATTGAGTCACTTAAT TGCTGATAAGATCCACGCTCGTTCTATAGGACCTTACTCTCTCGTTACGCAGCAACCTCTTGGAGGTAAAGCGCAGATGG GAGGACAGAGATTCGGGGAAATGGAGGTATGGGCTTTAGAGGCGTATGGGGTAGCTCATATGTTACAAGAGATTCTGACT GTTAAGTCCGACGATGTTTCGGGAAGAACTCGTATCTACGAATCAATCGTGAAAGGAGAAAACTTACTTCGTTCTGGAAC GCCTGAGTCGTTCAACGTTTTGATTAAAGAAATGCAAGGTCTAGGGCTTGATGTTCGCCCTATGGTAGTAGATGCTTAA Protein sequence : MFKCPERVSIKKKEDILDLPNLVEVQIKSYKQFLQIGKLAEERENIGLEEVFREIFPIKSYNEATILEYLSYNLGVPKYS PEECIRRGITYSVTLKVRFRLTDETGIKEEEVYMGTIPIMTDKGTFIINGAERVVVSQVHRSPGINFEQEKHSKGNVLFS FRIIPYRGSWLEAVFDINDLIYIHIDRKKRRRKILAMTFIRALGYSTDADIIEEFFSVEERSLRLEKDFVALVGKVLADN VVDADSSLVYGKAGEKLSTAMLKRILDAGVQSLKIAVGADENHPIIKMLAKDPTDSYEAALKDFYRRLRPGEPATLVNAR STIMRLFFDAKRYNLGRVGRYKLNKKLGFPLDDETLSQVTLRKEDVIGALKYLIRLRMGDEKTSIDDIDHLANRRVRSVG ELIQNHCRSGLARMEKIVRERMNLFDFSSDTLTPGKIISAKGLVSVLKDFFSRSQLSQFMDQTNPVAELTHKRRLSALGP GGLNRERAGFEVRDVHASHYGRICPIETPEGPNIGLITSLSSFAKINEFGFIETPYRVVRDGIVTDEIEYMTADVEEECV IAQASAELDEYDMFKTPVCWARYKGEAFEADTSTVTHMDVSPKQLVSVVTGLIPFLEHDDANRALMGSNMQRQAVPLLKT EAAIVGTGLEGRAAKDSGAIIVAQEDGVVEYVDSYEIVVAKKNNPTLKDRYQLKKFLRSNSGTCINQTPLCSVGDVVTHG DVLADGPATDKGELALGKNVLVAFMPWYGYNFEDAIIISERLIKQDAYTSIYIEEFELTARDTKLGKEEITRDIPNVSEE VLANLGEDGVVRIGAEVKPGDILVGKITPKSETELAPEERLLRAIFGEKAADVKDASLTVPPGTEGVVMDVKVFSRKDRL SKSDDELVEEAVHLKDLQKEYKSQLAQLKVEHREKLGALLLNEKAPAAIIHRRSADILVQEGAIFDQETIELLERESLVD LLMAPCDMYDVLKDILSSYETAVQRLEVNYKTEAEHIKEGDADLDHGVIRQVKVYVASKRKLQVGDKMAGRHGNKGVVSK IVPEADMPFLANGETVQMILNPLGVPSRMNLGQVLETHLGYAAKTAGIYVKTPVFEGFPESRIWDMMIEQGLPEDGKSYL FDGKTGERFDSKVVVGYIYMLKLSHLIADKIHARSIGPYSLVTQQPLGGKAQMGGQRFGEMEVWALEAYGVAHMLQEILT VKSDDVSGRTRIYESIVKGENLLRSGTPESFNVLIKEMQGLGLDVRPMVVDA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 47 |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 47 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| rpoB | YP_005811367.1 | DNA-directed RNA polymerase subunit beta | NC_009085.4918494.p0 | Protein | 0.0 | 47 |
| rpoB | YP_005811367.1 | DNA-directed RNA polymerase subunit beta | NC_010410.6003841.p0 | Protein | 0.0 | 47 |
| rpoB | YP_005811367.1 | DNA-directed RNA polymerase subunit beta | NC_011586.7046027.p0 | Protein | 0.0 | 47 |
| rpoB | YP_005811367.1 | DNA-directed RNA polymerase subunit beta | NC_010611.6233925.p0 | Protein | 0.0 | 47 |
| rpoB | YP_005811367.1 | DNA-directed RNA polymerase subunit beta | NC_011595.7060572.p0 | Protein | 0.0 | 47 |
| rpoB | YP_005811367.1 | DNA-directed RNA polymerase subunit beta | NC_011035.1.6448762. | Protein | 0.0 | 45 |
| rpoB | YP_005811367.1 | DNA-directed RNA polymerase subunit beta | CP002695.1.gene18.p0 | Protein | 0.0 | 44 |
