|
Name : rpoB (EJP617_13430) Accession : YP_005817911.1 Strain : Erwinia sp. Ejp617 Genome accession: NC_017445 Putative virulence/resistance : Unknown Product : DNA-directed RNA polymerase beta-subunit Function : - COG functional category : - COG ID : - EC number : - Position : 1475535 - 1479563 bp Length : 4029 bp Strand : + Note : - DNA sequence : ATGGTTTACTCCTATACCGAGAAAAAACGTATTCGTAAGGATTTTGGAAAACGTCCACAAGTTCTGGACATTCCTTATCT CCTTTCTATCCAGCTTGACTCGTTCCAGAAGTTCATCGAGCAAGATCCGGAAGGCCAATATGGACTGGAAGCGGCATTCC GTTCCGTATTCCCGATCCAAAGCTATAGCGGTAACTCTGAGCTACAGTATGTCAGCTACCGTTTAGGCGAACCTGTATTT GATGTGAAAGAGTGTCAGATTCGTGGCGTCACGTTCTCTGCTCCTCTGCGCGTTAAACTGCGCCTGGTGATCTACGAGCG CGAAGCGCCGGAAGGCACCGTTAAAGACATCAAAGAACAAGAAGTGTACATGGGTGAAATTCCACTCATGACCGATAACG GTACCTTTGTCATCAACGGTACAGAACGCGTTATCGTTTCTCAGCTGCATCGTAGTCCTGGTGTGTTCTTCGACAGCGAT AAGGGTAAAACCCACTCTTCGGGTAAAGTGCTGTATAACGCACGTATTATCCCTTACCGTGGTTCATGGTTGGACTTCGA GTTCGACCCGAAAGACAACCTGTTCGTCCGTATTGACCGTCGCCGCAAACTGCCTGCGACCATCATTCTGCGCGCGCTGA ATTACACCACTGAGCAAATCCTCGATCTGTTCTTCGAAAAAGTGGTTTACCAAATTCGCGACAACAAACTGCAGATGGAA CTTGTTCCGGAGCGCCTGCGTGGTGAAACTGCGTCATTTGACATTGAGTCGAATGGCACCGTTTACGTCGAAAAAGGTCG CCGCATTACCGCGCGCCATATTCGTCAGCTGGAAAAAGATGCTGTTGCTCATATCGAAGTTCCGGTTGAGTACATCGCGG GCAAAGTTGTCGCTAAAGACTACATCGACGAGAGCACCGGTGAGCTGCTGATCGCCGCCAACATGGAGCTGTCGTTGGAT CTGCTGGCCAAACTGAGCCAGTCGGGTCACAAACGTATCGAAACGCTGTTCACCAATGACCTGGATCACGGCCCGTACAT TTCTGAAACCGTACGCGTCGACCCAACCAGCGATCGCCTGAGCGCACTGGTTGAGATCTACCGCATGATGCGTCCTGGTG AGCCACCAACGCGTGAAGCGGCCGAAAACCTGTTTGAGAACCTGTTCTTCTCTGAAGACCGTTACGACCTGTCTGCGGTA GGTCGCATGAAGTTTAACCGTTCTCTGCTGCGTGACGAGATAGAAGGTTCCGGCATCTTGAGCAAAGACGACATCATTCA GGTGATGAAGAAGCTCATCGGTATCCGTAACGGTATTGGCGAAGTGGATGACATCGATCACCTCGGCAACCGTCGTATCC GTTCCGTTGGCGAAATGGCCGAGAACCAGTTCCGTGTTGGCTTAGTGCGCGTAGAGCGTGCGGTGAAAGAGCGTCTGTCC CTGGGCGATCTGGATACCCTGATGCCTCAGGATATGATCAACGCCAAGCCAATTTCTGCGGCAGTGAAAGAGTTCTTCGG TTCCAGCCAGCTGTCACAGTTTATGGACCAGAACAACCCGTTGTCTGAGATCACGCACAAACGCCGTATCTCTGCACTGG GCCCGGGCGGTCTGACGCGTGAGCGTGCAGGTTTCGAAGTGCGAGACGTACACCCGACTCACTACGGTCGCGTATGTCCC ATCGAAACGCCGGAAGGTCCAAACATCGGTCTGATCAACTCTTTGTCTGTGTATGCACAGACCAACGAGTACGGTTTCCT GGAAACCCCATACCGTCGCGTGCGCGATGGCGTGGTGACCGACGAAATTCATTACCTCTCTGCCATTGAAGAGGGTAACT ACGTTATCGCTCAGGCAAACACCAACCTCGACGACGAAGGCCACTTCGTAGACGACCTGGTGACCTGCCGTAGCAAAGGC GAATCGAGCCTGTTCAGCCGCGATCAGGTTGACTATATGGACGTTTCCACCCAGCAGGTGGTTTCCGTCGGTGCGTCACT GATCCCGTTCCTGGAGCACGATGACGCCAACCGCGCATTGATGGGTGCAAACATGCAACGTCAGGCGGTACCTACTCTGC GTGCTGATAAGCCGCTGGTAGGAACCGGTATGGAACGCGCGGTAGCGGTCGACTCCGGCGTCACTGCCGTAGCGAAACGT GGTGGTACCGTTCAGTACGTTGATGCATCGCGTATCGTTATTAAAGTTAACGAAGACGAAATGTACCCGGGCGAAGCCGG TATCGACATTTACAATCTGACCAAATACACCCGTTCTAACCAGAACACCTGCATCAACCAGATGCCGTGTGTCAACCTGG GTGAACCGATTGAACGCGGTGACGTGCTGGCTGATGGTCCTTCAACCGACCTTGGCGAACTGGCACTGGGTCAGAACATG CGCGTGGCGTTCATGCCGTGGAACGGCTACAACTTCGAAGACTCCATCTTAGTCTCCGAGCGCGTGGTACAGGAAGATCG CTTTACCACTATCCACATTCAGGAACTGGCCTGCGTGTCGCGTGACACCAAGCTGGGGCCGGAAGAGATCACCGCTGATA TCCCGAACGTGGGTGAAGCCGCGCTCTCCAAACTGGATGAGTCCGGTATCGTGTACATCGGTGCTGAAGTGACCGGTGGT GACATTCTGGTCGGTAAGGTCACGCCGAAAGGTGAAACCCAGCTGACGCCAGAAGAGAAGCTGCTGCGCGCTATTTTCGG TGAGAAAGCGTCTGACGTTAAGGACTCTTCTCTGCGTGTACCGAACGGCGTTTCAGGTACCGTTATCGACGTTCAGGTCT TCACCCGTGACGGTGTGGAAAAAGACAAACGCGCGCTGGAAATCGAAGAGATGCAGCTGAAGCAGGCGAAGAAAGACCTG TCTGAAGAACTGCAGATCCTCGAAGCTGGCCTGTTCAGCCGTATTAACTACCTGCTGGTTTCCGGCGGTGTTGAAGCGGA AAAACTGGACAAGCTGCCACGCGAGCGCTGGCTGGAACTGGGCCTGAGCGATGAAGACAAGCAAAACCAGCTGGAACAGC TGGCCGAGCAGTACGACGAGCTGAAGCACGAGTTTGAGAAAAAACTTGATGCCAAGCGCCGCAAAATCACTCAGGGCGAT GACCTGGCACCTGGCGTGCTGAAAATCGTTAAAGTGTACCTGGCGGTTAAACGTCAGATTCAGCCTGGTGACAAAATGGC AGGTCGTCACGGGAACAAAGGTGTTATCTCCAAGATCAACCCGATCGAAGATATGCCTTACGATGAGAACGGTACGCCGG TCGATATCGTACTGAACCCGCTGGGCGTACCATCACGTATGAATATCGGTCAGATTCTTGAAACCCACCTGGGTATGGCT GCGAAAGGCATTGGCGAGAAAATCAACGCCATGCTTAAGAAGCAGGAAGACGTGTCCAGGCTGCGTGAGTTTATTCAGCG TGCTTACGATCTGGGTACCGACGTGCGCCAGAAAGTTGACCTGAACACCTTCACTGACGACGAAGTGCTGCGTCTGGCAG AAAACCTGAAAAAAGGTATGCCAATCGCCACTCCGGTGTTTGATGGTGCGAAAGAGAGCGAAATCAAAGAGCTGTTACAG CTTGGCGGCCTGCCTTCTTCCGGCCAGATCACCCTGTTCGATGGTCGTACCGGTGAGCAGTTCGAACGTCAGGTTACCGT TGGCTACATGTACATGCTTAAACTGAACCACCTGGTTGATGACAAAATGCATGCACGTTCTACCGGTTCCTACAGCCTTG TTACCCAGCAGCCGCTGGGTGGTAAAGCGCAGTTCGGTGGTCAGCGCTTCGGTGAGATGGAAGTGTGGGCGCTGGAAGCA TACGGTGCCGCGTATACCCTGCAGGAAATGCTGACCGTGAAGTCTGATGACGTTAATGGCCGTACGAAGATGTACAAAAA CATCGTCGACGGTAACCATCAGATGGAACCGGGCATGCCGGAATCCTTCAACGTACTGTTGAAAGAGATCCGCTCGCTGG GTATCAACATCGAGCTGGAAGACGAGTAA Protein sequence : MVYSYTEKKRIRKDFGKRPQVLDIPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVSYRLGEPVF DVKECQIRGVTFSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSD KGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVVYQIRDNKLQME LVPERLRGETASFDIESNGTVYVEKGRRITARHIRQLEKDAVAHIEVPVEYIAGKVVAKDYIDESTGELLIAANMELSLD LLAKLSQSGHKRIETLFTNDLDHGPYISETVRVDPTSDRLSALVEIYRMMRPGEPPTREAAENLFENLFFSEDRYDLSAV GRMKFNRSLLRDEIEGSGILSKDDIIQVMKKLIGIRNGIGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS LGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCP IETPEGPNIGLINSLSVYAQTNEYGFLETPYRRVRDGVVTDEIHYLSAIEEGNYVIAQANTNLDDEGHFVDDLVTCRSKG ESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKR GGTVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVNLGEPIERGDVLADGPSTDLGELALGQNM RVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGG DILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDL SEELQILEAGLFSRINYLLVSGGVEAEKLDKLPRERWLELGLSDEDKQNQLEQLAEQYDELKHEFEKKLDAKRRKITQGD DLAPGVLKIVKVYLAVKRQIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMA AKGIGEKINAMLKKQEDVSRLREFIQRAYDLGTDVRQKVDLNTFTDDEVLRLAENLKKGMPIATPVFDGAKESEIKELLQ LGGLPSSGQITLFDGRTGEQFERQVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEA YGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 70 |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 70 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| rpoB | YP_005817911.1 | DNA-directed RNA polymerase beta-subunit | CP001138.1.gene4362. | Protein | 0.0 | 97 |
| rpoB | YP_005817911.1 | DNA-directed RNA polymerase beta-subunit | CP001918.1.gene250.p | Protein | 0.0 | 97 |
| rpoB | YP_005817911.1 | DNA-directed RNA polymerase beta-subunit | CP000647.1.gene4402. | Protein | 0.0 | 97 |
| rpoB | YP_005817911.1 | DNA-directed RNA polymerase beta-subunit | CP000034.1.gene3741. | Protein | 0.0 | 96 |
| rpoB | YP_005817911.1 | DNA-directed RNA polymerase beta-subunit | NC_002695.1.914942.p | Protein | 0.0 | 96 |
| rpoB | YP_005817911.1 | DNA-directed RNA polymerase beta-subunit | CP004022.1.gene2794. | Protein | 0.0 | 92 |
| rpoB | YP_005817911.1 | DNA-directed RNA polymerase beta-subunit | NC_002516.2.881699.p | Protein | 0.0 | 73 |
| rpoB | YP_005817911.1 | DNA-directed RNA polymerase beta-subunit | NC_009085.4918494.p0 | Protein | 0.0 | 70 |
| rpoB | YP_005817911.1 | DNA-directed RNA polymerase beta-subunit | NC_010410.6003841.p0 | Protein | 0.0 | 70 |
| rpoB | YP_005817911.1 | DNA-directed RNA polymerase beta-subunit | NC_011586.7046027.p0 | Protein | 0.0 | 70 |
| rpoB | YP_005817911.1 | DNA-directed RNA polymerase beta-subunit | NC_010400.5987325.p0 | Protein | 0.0 | 70 |
| rpoB | YP_005817911.1 | DNA-directed RNA polymerase beta-subunit | NC_010611.6233925.p0 | Protein | 0.0 | 70 |
| rpoB | YP_005817911.1 | DNA-directed RNA polymerase beta-subunit | NC_011595.7060572.p0 | Protein | 0.0 | 70 |
| rpoB | YP_005817911.1 | DNA-directed RNA polymerase beta-subunit | CP000675.2.gene392.p | Protein | 0.0 | 69 |
| rpoB | YP_005817911.1 | DNA-directed RNA polymerase beta-subunit | NC_008702.1.4609796. | Protein | 0.0 | 66 |
| rpoB | YP_005817911.1 | DNA-directed RNA polymerase beta-subunit | NC_011035.1.6448762. | Protein | 0.0 | 64 |
| rpoB | YP_005817911.1 | DNA-directed RNA polymerase beta-subunit | CP002695.1.gene18.p0 | Protein | 0.0 | 64 |
| rpoB | YP_005817911.1 | DNA-directed RNA polymerase beta-subunit | AM180355.1.gene120.p | Protein | 0.0 | 48 |
