|
Name : rpoB (IALB_0905) Accession : YP_005845885.1 Strain : Ignavibacterium album JCM 16511 Genome accession: NC_017464 Putative virulence/resistance : Unknown Product : DNA-directed RNA polymerase subunit beta Function : - COG functional category : - COG ID : - EC number : - Position : 1007363 - 1011121 bp Length : 3759 bp Strand : + Note : - DNA sequence : TTGGATAATAACCGCATTTCTTTTAGCCGAATTAAATCTGTTCTCGATGTTCCTGATTTGTTGGGAATTCAGACCGAAAC ATTTGAAGATTTTCTTCAACACAATGTTCCTCCATCAAAAAGAGAGAACAAAGGTCTGCAACAGGTTTTTACTACTAATT TCCCGGTGCTTGATAATAAAGAAAATTACCGTCTTGATTTTTTAGAGTATTATGTAGAAAAACCCAGATTCACTGTTCAG GAATGTCTGGAAAGAGGTTTGACTTATTCCGCACCACTGAAAGCCAAACTCAGGCTTTCAACTAAAGATCAGGATACTCA GGAGTTTATAAATACTGTTGAGCAGGAAGTTTATCTTGGCAATCTTCCCTTTATGACAGAAAAGGGAACATTTATTATTA ACGGTGCTGAAAGAGTAATTGTGTCACAATTACATCGTTCACCAGGAGTTGCATTCTCTCAAACTCTGCATCCAAATGGT ACTCCTATTTATACGGCGAGAATTATCCCTCTGAGAGGTTCATGGGTTGAATTTGCAACAGATATAAATTATGTAATGTA TGTTTATATCGATCGAAGAAAAAAATTCCCTGCAACTACTTTACTCAGAGCAATAGGTTTTGAATCAGACGAACAAATTT TAAAACTTTTTGATCTGGTTGAGGAAGTTCCGGTTAAGAAATCCAAGTTGGAAAATTTTGTAGGAAGAATGGTTGCAAGC GATTTATTTGACATGTCAACCGGTGAAATCTTCCTTACCAGAGGGGCAATCTTTAGTGAAGAAGATGTTGAAAGAGTTAA AGAAGCAGAAATTGATGTACTTAAGTTCATTAAATCTGATCGCTCACCAGATCAGGATTTAATTGTTAATACTCTTCAGA AAGATACTTCTACATCAAGAGAAGAAGCCCTCTATTCAATTTACAGGCAATTAAGGACAGGCGAAGCTCCTGATTTGGAA TCAGCAGAGCAGCTTATTGAAAAATTATTCTTTAACGATAAAAGATATGATTTGGGCGAAGTTGGTCGTCACAGAATGAA TGACAAACTGAAATTGAATGTTCCCGAAAATGTAACTGTGCTTACGAACGAAGATATAGTTGCAATAATGAGATATATAA TTGATCTTAAAAATGGAATTGCTCCGATAGACGATATTGATCATTTGGGTAACAGAAGAATCAGAACTGTTGGCGAGCAG CTTTCACAGCAGTTTAATGTTGGTATGGCGCGTATGGCAAGAACTATTAAAGAAAGAATGAATATGCGCGATACCGAAAA CTTTACACCACAGGATTTGGTAAATGCAAGAACTATAACAAGCGTTATAAATGCATTCTTCGGAACAAATCAGCTCTCAC AATTTATGGATCAAACTAATCCATTAGCTGAGATGACACACAAGCGAAGAATGTCTGCATTAGGTCCTGGTGGACTTACC CGCGAAAGAGCAGGATTTGAAGTAAGAGATGTTCACTACACACATTACGGCAGACTTTGTCCGATTGAAACTCCCGAAGG ACCAAACATAGGACTTATATCCTCTCTTACAATTTATGCTCGCGTTAATAAATATGGATTTTTAGAAACCCCTTATAGAA AAGTTTTAAAAGGAAAAGTTACGAATGAAGTTGAATATCTTTCTGCTGAACAGGAAGACAAATTTATCATTGCTCAGGCA AATGCTCCAATTAATGAACAAGGTAAGTTTCTTAATGATAGAGTAAAGGCAAGATACAAAGGTGAATTTCCAATAGTACA TCCTGAAGAAGTTCATTATATGGATGTTGCACCTGCTCAGATTGTTAGTGCCGCTGCAGCTTTAATTCCATTCCTTGAAC ACGATGATGCTAACAGAGCTTTGATGGGCTCAAACATGCAGCGTCAGGCAGTTCCATTATTAAAACCTGAAGCTCCAATT GTCGGAACTGGTATGGAAAGAAAAGTTGCGTATGATTCAAGAGCTCTGCTTGTTGCTGAAGATGATGGTGTTGTAGCAAG TGTTGACGCAAACAGAATAGTTGTTAAGTATGATATTAATCCCAATAGCTTTGAAGCTCTTACCAGCTTTAATGAAACCA GAGAAGTAGTTTATGAACTCACAAAATTCCAGGGCACAAACCAGGAAACTTGTGTAAATCAAAAGCCAATTGTTAAAGAA GGTCAGCGAGTTAAAAAAGGTGATGTATTGGCAGATGGAGCTGCAACTGATCAAGGTGAACTCGCACTTGGTAGGAATGT TTTGGTCGCATTTATGCCCTGGAGAGGTTACAACTTTGAAGATGCTATTATCATCAGTGAAAGAGTTGTCAGAGAAGATG TTTACACTTCGATTCACATCGAAGAATTTGAGTTGCAGGTTAGAGAAACTAAACGTGGCGAAGAAGAATTAACAAGAGAA ATTCCGAATGTAAGTGAAGAAGCAGTTAAAAATCTTGACGAGAATGGAATTATCAGAGAAGGTGCTGAAGTTAAAGAAGG TGATATTCTTATCGGAAAAATTACTCCGAAAGGTGAAACCGATCCTACACCGGAAGAAAAACTGCTTCGTGCAATATTCG GAGATAAAGCTGGTGATGTAAAAGATGCCTCGCTACGTGCTTCGCCTGGTTTGAGAGGTACTGTAATCAAAACAAGATTA TTCAGTCGCAAGAAAAGAGATAACGAATCTAAAAAACAAGAGAAAGCTGCACTTGAACAGCTTGATCAGGATTTCAAAAA GAAATTACAGCAGCATTATAACAAGCTCGTTGAGAAATTAACAAAGATTACTGAAGGCGAAACTACAACAGGCATCAGAG ATCTTGATGGAAGCGTTGTTTTAAGAAGCGGAACAACCATTAAAGAAAAAACTTTTTCTGAAATGGAAGATGTTACAAAG CTTGATTATACTGCTGACTGGTTCGAATCTAAAAAAGTGAATAATATGGTTAAGACTCTCTTCAAGAATTATTTCGATAT AAAAGTTGATATTGAAGAAGAGTACAAAAAAGAAAAAGTTAAAATTCAAAGTGGAGATGAATTACCTCCGGGAATTGTTC AGCTCGCAAAAGTTTATGTTGCTAAAAAGCGTAAACTTTCTGTTGGCGATAAAATGGCTGGACGACACGGTAATAAAGGT GTCGTTGCCAAAATAGTTCCTGTTGAAGATATGCCTTTCTTACCAGATGGAACTCCTGTAGATATTATTCTTAATCCGCT TGGTGTGCCGTCAAGAATGAATCTAGGACAGCTGTATGAAACAGTTCTCGGCTGGGTTGGAAAGAAGATGGGAGTTAAAT TCGCAACTCCGATTTTTGATGGTGCTAAGTTGGAAGATGTTGAGCAATGGTTACAAAAAGCAGGAATTGATCCTGGTTCG AAAACTGACTTATATGATGGAAGAACCGGTGAAAAATTCCATCAAAAGGTAACCTGCGGTTATATCTATATGCTTAAACT CAGTCACCTTGTCGATGATAAGATTCACGCAAGGTCGATTGGACCTTACTCACTTATCACGCAACAACCACTCGGTGGTA AAGCTCAATTTGGTGGTCAGCGATTCGGAGAAATGGAGGTTTGGGCACTAGAAGGTTATGGAGCTTCGCATATTCTTCAG GAAATACTGACTGTTAAGAGTGATGATGTTGCCGGTCGTGCAAAAGTTTATGAATCATTAGTTAAAGGTGAAAATCTTCC TGAGCCGAATATTCCTGAAGCATTTAATGTAATGATTAAAGAATTACAAGGTCTTGGTCTGGATATTAAGATTAACTAA Protein sequence : MDNNRISFSRIKSVLDVPDLLGIQTETFEDFLQHNVPPSKRENKGLQQVFTTNFPVLDNKENYRLDFLEYYVEKPRFTVQ ECLERGLTYSAPLKAKLRLSTKDQDTQEFINTVEQEVYLGNLPFMTEKGTFIINGAERVIVSQLHRSPGVAFSQTLHPNG TPIYTARIIPLRGSWVEFATDINYVMYVYIDRRKKFPATTLLRAIGFESDEQILKLFDLVEEVPVKKSKLENFVGRMVAS DLFDMSTGEIFLTRGAIFSEEDVERVKEAEIDVLKFIKSDRSPDQDLIVNTLQKDTSTSREEALYSIYRQLRTGEAPDLE SAEQLIEKLFFNDKRYDLGEVGRHRMNDKLKLNVPENVTVLTNEDIVAIMRYIIDLKNGIAPIDDIDHLGNRRIRTVGEQ LSQQFNVGMARMARTIKERMNMRDTENFTPQDLVNARTITSVINAFFGTNQLSQFMDQTNPLAEMTHKRRMSALGPGGLT RERAGFEVRDVHYTHYGRLCPIETPEGPNIGLISSLTIYARVNKYGFLETPYRKVLKGKVTNEVEYLSAEQEDKFIIAQA NAPINEQGKFLNDRVKARYKGEFPIVHPEEVHYMDVAPAQIVSAAAALIPFLEHDDANRALMGSNMQRQAVPLLKPEAPI VGTGMERKVAYDSRALLVAEDDGVVASVDANRIVVKYDINPNSFEALTSFNETREVVYELTKFQGTNQETCVNQKPIVKE GQRVKKGDVLADGAATDQGELALGRNVLVAFMPWRGYNFEDAIIISERVVREDVYTSIHIEEFELQVRETKRGEEELTRE IPNVSEEAVKNLDENGIIREGAEVKEGDILIGKITPKGETDPTPEEKLLRAIFGDKAGDVKDASLRASPGLRGTVIKTRL FSRKKRDNESKKQEKAALEQLDQDFKKKLQQHYNKLVEKLTKITEGETTTGIRDLDGSVVLRSGTTIKEKTFSEMEDVTK LDYTADWFESKKVNNMVKTLFKNYFDIKVDIEEEYKKEKVKIQSGDELPPGIVQLAKVYVAKKRKLSVGDKMAGRHGNKG VVAKIVPVEDMPFLPDGTPVDIILNPLGVPSRMNLGQLYETVLGWVGKKMGVKFATPIFDGAKLEDVEQWLQKAGIDPGS KTDLYDGRTGEKFHQKVTCGYIYMLKLSHLVDDKIHARSIGPYSLITQQPLGGKAQFGGQRFGEMEVWALEGYGASHILQ EILTVKSDDVAGRAKVYESLVKGENLPEPNIPEAFNVMIKELQGLGLDIKIN |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 49 |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 49 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| rpoB | YP_005845885.1 | DNA-directed RNA polymerase subunit beta | NC_009085.4918494.p0 | Protein | 0.0 | 49 |
| rpoB | YP_005845885.1 | DNA-directed RNA polymerase subunit beta | NC_010410.6003841.p0 | Protein | 0.0 | 49 |
| rpoB | YP_005845885.1 | DNA-directed RNA polymerase subunit beta | NC_011586.7046027.p0 | Protein | 0.0 | 49 |
| rpoB | YP_005845885.1 | DNA-directed RNA polymerase subunit beta | NC_010400.5987325.p0 | Protein | 0.0 | 49 |
| rpoB | YP_005845885.1 | DNA-directed RNA polymerase subunit beta | NC_010611.6233925.p0 | Protein | 0.0 | 49 |
| rpoB | YP_005845885.1 | DNA-directed RNA polymerase subunit beta | NC_011595.7060572.p0 | Protein | 0.0 | 49 |
| rpoB | YP_005845885.1 | DNA-directed RNA polymerase subunit beta | CP004022.1.gene2794. | Protein | 0.0 | 49 |
| rpoB | YP_005845885.1 | DNA-directed RNA polymerase subunit beta | NC_002695.1.914942.p | Protein | 0.0 | 48 |
| rpoB | YP_005845885.1 | DNA-directed RNA polymerase subunit beta | CP001918.1.gene250.p | Protein | 0.0 | 48 |
| rpoB | YP_005845885.1 | DNA-directed RNA polymerase subunit beta | CP000034.1.gene3741. | Protein | 0.0 | 48 |
| rpoB | YP_005845885.1 | DNA-directed RNA polymerase subunit beta | CP001138.1.gene4362. | Protein | 0.0 | 48 |
| rpoB | YP_005845885.1 | DNA-directed RNA polymerase subunit beta | CP000647.1.gene4402. | Protein | 0.0 | 48 |
| rpoB | YP_005845885.1 | DNA-directed RNA polymerase subunit beta | NC_002516.2.881699.p | Protein | 0.0 | 46 |
