Gene Information

Name : LC2W_0027 (LC2W_0027)
Accession : YP_005854948.1
Strain : Lactobacillus casei LC2W
Genome accession: NC_017473
Putative virulence/resistance : Resistance
Product : ABC transporter ATP-binding protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 26199 - 26900 bp
Length : 702 bp
Strand : -
Note : -

DNA sequence : 
ATGGCATATATCGAAGTCAAACATGAATCAAAACGTTACAAAATGGGCGAAACCATCATTACAGCAAATAACGACATTAA
TTTTACGGCTGATCAAGGCAAATTAACCGTGATTCTTGGTCCCAGCGGTGCCGGTAAATCAACCTTGCTCAATATCCTCG
GTGGCATGGACTCCCCCACTGAAGGCGAGGTATGGATTGACGGCACCGATATTGCGACTTTTTCTGATCGTCAACTGACC
GCTTTTCGCCGGCATAATGTTGGCTTCGTGTTCCAGTTTTACAATCTGATTCCGAACCTGACAACAAGGGAAAATGTTGA
ACTGGCTGGCTCAATTGTCAAAGATGCCTTGGATCCGACAACCGTTTTAAAGCAAGTCGGCCTAGGTGCGCGACTAGATA
ATTTTCCGTCACAGCTGTCTGGCGGTGAGCAACAACGGGTGGCCATTGCTCGGGCGTTGGCGAAAAACCCGAAGCTGCTG
CTTTGTGATGAACCAACTGGTGCCTTGGATTATCGAACCGGCAAACAAGTCTTGCAGTTGTTACAGGATGCCAGTCGTAA
AGATCATAAAACCGTCATGATCATTACCCATAATGCAGCGATTGCCAAAATGGCTGACCGGATCATCGAAATTAATGATG
CGCAGGTTCGCAGTATTCATGATGAACCGCAGCCAACGCCTGTCGCAGACATTGAGTGGTAG

Protein sequence : 
MAYIEVKHESKRYKMGETIITANNDINFTADQGKLTVILGPSGAGKSTLLNILGGMDSPTEGEVWIDGTDIATFSDRQLT
AFRRHNVGFVFQFYNLIPNLTTRENVELAGSIVKDALDPTTVLKQVGLGARLDNFPSQLSGGEQQRVAIARALAKNPKLL
LCDEPTGALDYRTGKQVLQLLQDASRKDHKTVMIITHNAAIAKMADRIIEINDAQVRSIHDEPQPTPVADIEW

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 6e-31 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
LC2W_0027 YP_005854948.1 ABC transporter ATP-binding protein NC_012469.1.7685735. Protein 7e-74 63
LC2W_0027 YP_005854948.1 ABC transporter ATP-binding protein CP001581.1.gene798.p Protein 2e-42 47
LC2W_0027 YP_005854948.1 ABC transporter ATP-binding protein NC_012469.1.7686878. Protein 2e-37 42
LC2W_0027 YP_005854948.1 ABC transporter ATP-binding protein CP001581.1.gene598.p Protein 1e-39 41