Gene Information

Name : LRHM_0130 (LRHM_0130)
Accession : YP_005864622.1
Strain : Lactobacillus rhamnosus GG
Genome accession: NC_017482
Putative virulence/resistance : Resistance
Product : antimicrobial peptide ABC transporter ATP-binding component
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 139584 - 140288 bp
Length : 705 bp
Strand : +
Note : -

DNA sequence : 
ATGGCAAAATTTATCACGGTAAAAGATGAAACCAGACAATATGGCTCAGGTGAAAGTACTGTTTATGCCAATCATAATGT
TTCGTTTGAAATCAATTCAGGTGAGATCACCGTCATTTTAGGGGCTTCAGGTGCAGGCAAATCAACTTTGCTGAATATTC
TGGGCGGGATGGATAAAACCACCAGTGGTCAGGTCACAGTGGTAGGTGAGAACATTTCTCAATATGATGCGCGGCAGTTG
ACAACATTTCGGCGAGAGCAGGTTGGGTTTGTCTTCCAATTCTACAACCTGGTACCGAACTTAACCGCACTGGAAAATGT
TGAACTAGCCAGCGAAATTGCGCCGGACGCATTAGATCCGCAAAAGACGTTGGTGGACGTCGGGTTAGGCAAAAGAATGA
ATAACTTCCCAGCTCAGCTTTCCGGTGGGGAACAACAGCGGGTGGCGATTGCGCGGGCGATTGCCAAGAACCCGTCACTG
TTATTGGCGGATGAGCCAACCGGGGCGCTGGATTATAAGACCGGGAAAAGCATTTTGAAACTTTTTGAAGACTTTTCCCA
CCAAACTGATAAGAACGTCATTATTGTGACGCATAACTCGTTGATTAAGCCCATGGCCGATCACGTCATTGAGATCCATG
ATGGCGAGGTCAAAGATGACTATCACAATGATCAGCCCACACCGGTCGAACAATTGAAATGGTAG

Protein sequence : 
MAKFITVKDETRQYGSGESTVYANHNVSFEINSGEITVILGASGAGKSTLLNILGGMDKTTSGQVTVVGENISQYDARQL
TTFRREQVGFVFQFYNLVPNLTALENVELASEIAPDALDPQKTLVDVGLGKRMNNFPAQLSGGEQQRVAIARAIAKNPSL
LLADEPTGALDYKTGKSILKLFEDFSHQTDKNVIIVTHNSLIKPMADHVIEIHDGEVKDDYHNDQPTPVEQLKW

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 3e-33 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
LRHM_0130 YP_005864622.1 antimicrobial peptide ABC transporter ATP-binding component NC_012469.1.7685735. Protein 3e-64 59
LRHM_0130 YP_005864622.1 antimicrobial peptide ABC transporter ATP-binding component NC_012469.1.7686878. Protein 5e-36 42
LRHM_0130 YP_005864622.1 antimicrobial peptide ABC transporter ATP-binding component CP001581.1.gene598.p Protein 1e-35 42