|
Name : rpoB (NMAA_1850) Accession : YP_005892845.1 Strain : Neisseria meningitidis WUE 2594 Genome accession: NC_017512 Putative virulence/resistance : Unknown Product : DNA-directed RNA polymerase beta chain (RNAP beta subunit; transcriptase beta chain; RNA polymerase beta subunit) Function : - COG functional category : - COG ID : - EC number : 2.7.7.6 Position : 2120622 - 2124800 bp Length : 4179 bp Strand : - Note : MultiFUN-ID: 2.2.2 DNA sequence : ATGAGCTATTCGTTTACCGAGAAAAAACGTATCCGTAAGAGTTTTGCAAAGCGGGAAAATGTTTTGGAAGTTCCTTTCTT GCTGGCAACCCAAATTGATTCTTATGCGAAGTTTTTGCAGCTGGAAAATGCTTTTGACAAACGTACCGATGACGGTCTGC AGGCGGCATTTAATTCTATTTTCCCGATTGTGAGCCATAACGGTTATGCGCGATTGGAGTTTGTGCATTACACATTGGGC GAGCCTTTGTTCGATATTCCCGAATGTCAGTTGCGCGGAATCACTTATGCAGCCCCCTTGCGCGCGCGTATCCGTTTGGT GATTTTGGATAAGGAAGCATCTAAACCGACGGTAAAAGAAGTTCGTGAAAACGAAGTGTATATGGGCGAAATTCCGTTGA TGACCCCGAGCGGTTCTTTTGTGATTAACGGCACAGAGCGTGTGATTGTTTCCCAGTTGCACCGTTCGCCCGGCGTGTTT TTCGAGCATGACAAAGGTAAGACGCACTCTTCCGGCAAATTGTTATTCTCCGCCCGCATCATTCCCTACCGTGGTTCATG GTTGGATTTTGAATTTGATCCGAAAGATTTGCTGTATTTCCGTATCGACCGCCGCCGTAAAATGCCGGTAACGATTTTGT TGAAGGCTTTGGGCTACAACAATGAGCAAATCTTGGATATTTTCTACGACAAAGAAACGTTCTATTTGTCTTCAAACGGT GTTCAAACCGATTTGGTCGCAGGCCGTCTGAAAGGCGAAACTGCCAAGGTCGATATCTTGGATAAAGAAGGCAATGTATT GGTTGCCAAAGGTAAGCGCATTACTGCGAAAAATATCCGTGATATTACCAATGCAGGCCTGACCCGTTTGGATGTAGAAC CAGAAAGCCTGCTGGGCAAAGCATTGGCTGCCGACCTGATTGATTCGGAAACCGGCGAGGTATTGGCTTCTGCCAATGAT GAAATTACAGAAGAGTTGTTGGCCAAATTTGATATCAACGGCGTAAAAGAAATTACGACCCTTTACATCAATGAGTTGGA TCAGGGTGCTTATATCTCCAATACCTTGCGTACGGATGAGACTGCCGGCCGGCAGGCGGCGCGTGTTGCGATTTACCGTA TGATGCGTCCGGGCGAACCGCCCACTGAAGAGGCGGTCGAGCAATTGTTTAACCGCTTGTTCTTCAGTGAAGACAGCTAC GATTTGTCCCGCGTAGGCCGTATGAAATTTAATACGCGCACATACGAACAAAAACTGTCCGAAGCCCAACAAAACTCTTG GTACGGCCGCCTGCTGAACGAAACGTTTGCCGGTGCTGCCGACAAAGGCGGTTATGTCCTGAGCGTCGAAGATATTGTCG CCTCGATTGCGACTTTGGTCGAGTTGCGTAACGGCCATGGCGAAGTGGACGATATCGATCACTTGGGCAACCGCCGAGTA CGTTCGGTAGGCGAGCTGACTGAAAACCAATTCCGTAGCGGTTTGGCCCGTGTGGAACGTGCCGTAAAAGAACGTTTGAA TCAGGCGGAATCAGAAAACTTGATGCCGCACGATTTGATTAATGCAAAACCTGTTTCTGCTGCTATTAAAGAATTCTTCG GCTCCAGCCAATTGAGTCAGTTTATGGATCAGACCAATCCCTTGTCTGAAGTAACCCATAAACGCCGCGTATCCGCATTG GGTCCGGGCGGTTTGACCCGCGAACGTGCAGGATTTGAGGTGCGGGACGTGCATCCGACCCACTACGGCCGCGTATGTCC GATTGAAACGCCTGAAGGTCCGAACATCGGTTTGATCAACTCACTGTCCGTTTATGCGCGCACCAATGATTACGGTTTCT TGGAAACGCCTTACCGCCGCGTTATCGACGGCAAAGTAACCGAGGAAATCGATTACTTGTCTGCCATCGAAGAAGGCCGC TATGTGATTGCACAGGCGAATGCCGATTTGGATTCAGATGGCAATCTGATTGGCGATTTGGTTACCTGTCGTGAAAAAGG CGAAACCATTATGGCAACGCCCGACCGCGTCCAATATATGGACGTGGCAACCGGCCAGGTGGTATCCGTTGCGGCATCCC TGATTCCGTTCTTGGAACACGATGACGCGAACCGCGCATTGATGGGTGCCAACATGCAACGTCAGGCAGTGCCTTGCCTG CGTCCTGAAAAACCGATGGTCGGTACCGGTATCGAGCGTTCCGTTGCCGTTGACTCTGCCACTGCGATCGTTGCCCGCCG AGGCGGTGTGGTTGAGTATGTCGATGCCAACCGCGTCGTCGTTCGTGTTCATGATGATGAAGCGACTGCTGGCGAAGTGG GTGTCGATATTTACAACTTGGTTAAATTCACCCGTTCCAACCAATCTACCAACATCAACCAACGTCCGGCCGTCAAAGCC GGCGATGTGTTGCAACGCGGCGACTTGGTGGCCGACGGTGCGTCTACCGACTTGGGCGAATTGGCTTTGGGTCAAAACAT GACCATCGCCTTCATGCCATGGAACGGTTACAACTATGAAGACTCGATTCTGATTTCAGAAAAAGTGGCTGCGGATGATC GTTACACTTCGATTCACATTGAGGAATTGAATGTCGTTGCCCGCGATACCAAGCTGGGTGCGGAAGACATTACCCGCGAT ATTCCGAACTTGTCCGAGCGTATGCAAAACCGCTTGGACGAATCCGGTATCGTTTACATCGGTGCAGAAGTAGAAGCCGG CGATGTGTTGGTAGGCAAAGTAACGCCTAAAGGCGAAACCCAGCTGACGCCGGAAGAAAAACTGTTGCGCGCCATCTTCG GCGAAAAAGCGTCTGACGTAAAAGATACTTCATTGCGTATGCCTACCGGTATGAGCGGTACGGTTATCGACGTTCAAGTC TTCACTCGTGAAGGTATTCAACGCGACAAACGCGCCCAATCCATTATCGATTCCGAGTTGAAACGCTACCGTTTGGATTT GAACGACCAATTGCGTATTTTCGACAACGACGCATTCGACCGTATCGAACGTATGATTGTGGGTCAAAAAGCCAATGGTG GTCCGATGAAGCTGGCTAAAGGCAGCGAAATTACTACCGAATATTTGGCGGGTCTGCCGAGCAGGCACGATTGGTTCGAT ATCCGTCTGACCGATGAAGATTTGGCCAAGCAGTTGGAACTGATTAAAGTGAGCCTGCAACAAAAACGCGAAGAAGCGGA CGAGTTATACGAAATCAAGAAGAAAAAACTGACCCAAGGCGACGAATTGCAACCCGGCGTACAAAAAATGGTGAAAGTTT TTATCGCCATCAAACGCCGTCTGCAAGCCGGCGACAAAATGGCGGGCCGCCACGGTAACAAAGGCGTGGTATCGCGCATT CTGCCAGTGGAAGACATGCCTTACATGGCGGACGGCCGTCCGGTAGACATCGTACTGAACCCATTGGGCGTACCTTCCCG TATGAACATCGGTCAGATTTTGGAAGTTCACTTGGGTTGGGCAGCAAAAGGTATCGGCGAGCGTATCGACCGTATGCTGA AAGAGCAACGCAAAGCAGGCGAGTTGCGCGAGTTCTTGAACAGACTCTACAACGGCAGCGGTAAGAAAGAAGATTTGGAT GCCCTGACTGATGAAGAAATCATCGAACTGGCCTCCAACCTGCGCAAAGGTGCATCTTTCGCCTCTCCTGTATTCGACGG TGCGAAAGAGTCTGAAATCCGCGAAATGCTGAACTTGGCTTATCCGAGCGACGATCCTGAGGTTGAAAAACTGGGCTTCA ACGACAGTAAAACCCAAATCACGCTGTATGACGGCCGTTCAGGCGAAGCATTTGACCGCAAGGTTACAGTAGGTGTGATG CACTATCTGAAACTGCACCACTTGGTTGACGAAAAAATGCACGCCCGTTCTACCGGTCCGTACAGTCTGGTTACCCAGCA GCCTTTGGGCGGTAAAGCCCAGTTCGGCGGCCAACGTTTCGGCGAGATGGAGGTTTGGGCATTGGAAGCATACGGCGCGG CATACACGCTGCAAGAGATGTTGACTGTGAAGTCTGACGACGTGAACGGTCGTACCAAAATGTACGAAAACATCGTCAAA GGCGAACACAAAATCGATGCCGGTATGCCCGAGTCCTTCAACGTATTGGTCAAAGAGATTCGCTCACTGGGCTTGGATAT CGATTTGGAACGCTACTGA Protein sequence : MSYSFTEKKRIRKSFAKRENVLEVPFLLATQIDSYAKFLQLENAFDKRTDDGLQAAFNSIFPIVSHNGYARLEFVHYTLG EPLFDIPECQLRGITYAAPLRARIRLVILDKEASKPTVKEVRENEVYMGEIPLMTPSGSFVINGTERVIVSQLHRSPGVF FEHDKGKTHSSGKLLFSARIIPYRGSWLDFEFDPKDLLYFRIDRRRKMPVTILLKALGYNNEQILDIFYDKETFYLSSNG VQTDLVAGRLKGETAKVDILDKEGNVLVAKGKRITAKNIRDITNAGLTRLDVEPESLLGKALAADLIDSETGEVLASAND EITEELLAKFDINGVKEITTLYINELDQGAYISNTLRTDETAGRQAARVAIYRMMRPGEPPTEEAVEQLFNRLFFSEDSY DLSRVGRMKFNTRTYEQKLSEAQQNSWYGRLLNETFAGAADKGGYVLSVEDIVASIATLVELRNGHGEVDDIDHLGNRRV RSVGELTENQFRSGLARVERAVKERLNQAESENLMPHDLINAKPVSAAIKEFFGSSQLSQFMDQTNPLSEVTHKRRVSAL GPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYARTNDYGFLETPYRRVIDGKVTEEIDYLSAIEEGR YVIAQANADLDSDGNLIGDLVTCREKGETIMATPDRVQYMDVATGQVVSVAASLIPFLEHDDANRALMGANMQRQAVPCL RPEKPMVGTGIERSVAVDSATAIVARRGGVVEYVDANRVVVRVHDDEATAGEVGVDIYNLVKFTRSNQSTNINQRPAVKA GDVLQRGDLVADGASTDLGELALGQNMTIAFMPWNGYNYEDSILISEKVAADDRYTSIHIEELNVVARDTKLGAEDITRD IPNLSERMQNRLDESGIVYIGAEVEAGDVLVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRMPTGMSGTVIDVQV FTREGIQRDKRAQSIIDSELKRYRLDLNDQLRIFDNDAFDRIERMIVGQKANGGPMKLAKGSEITTEYLAGLPSRHDWFD IRLTDEDLAKQLELIKVSLQQKREEADELYEIKKKKLTQGDELQPGVQKMVKVFIAIKRRLQAGDKMAGRHGNKGVVSRI LPVEDMPYMADGRPVDIVLNPLGVPSRMNIGQILEVHLGWAAKGIGERIDRMLKEQRKAGELREFLNRLYNGSGKKEDLD ALTDEEIIELASNLRKGASFASPVFDGAKESEIREMLNLAYPSDDPEVEKLGFNDSKTQITLYDGRSGEAFDRKVTVGVM HYLKLHHLVDEKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYENIVK GEHKIDAGMPESFNVLVKEIRSLGLDIDLERY |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 65 |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 65 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| rpoB | YP_005892845.1 | DNA-directed RNA polymerase beta chain (RNAP beta subunit; transcriptase beta chain; RNA polymerase beta subunit) | NC_011035.1.6448762. | Protein | 0.0 | 99 |
| rpoB | YP_005892845.1 | DNA-directed RNA polymerase beta chain (RNAP beta subunit; transcriptase beta chain; RNA polymerase beta subunit) | NC_008702.1.4609796. | Protein | 0.0 | 75 |
| rpoB | YP_005892845.1 | DNA-directed RNA polymerase beta chain (RNAP beta subunit; transcriptase beta chain; RNA polymerase beta subunit) | CP002695.1.gene18.p0 | Protein | 0.0 | 74 |
| rpoB | YP_005892845.1 | DNA-directed RNA polymerase beta chain (RNAP beta subunit; transcriptase beta chain; RNA polymerase beta subunit) | NC_009085.4918494.p0 | Protein | 0.0 | 66 |
| rpoB | YP_005892845.1 | DNA-directed RNA polymerase beta chain (RNAP beta subunit; transcriptase beta chain; RNA polymerase beta subunit) | NC_002516.2.881699.p | Protein | 0.0 | 66 |
| rpoB | YP_005892845.1 | DNA-directed RNA polymerase beta chain (RNAP beta subunit; transcriptase beta chain; RNA polymerase beta subunit) | CP000034.1.gene3741. | Protein | 0.0 | 65 |
| rpoB | YP_005892845.1 | DNA-directed RNA polymerase beta chain (RNAP beta subunit; transcriptase beta chain; RNA polymerase beta subunit) | NC_002695.1.914942.p | Protein | 0.0 | 65 |
| rpoB | YP_005892845.1 | DNA-directed RNA polymerase beta chain (RNAP beta subunit; transcriptase beta chain; RNA polymerase beta subunit) | NC_010400.5987325.p0 | Protein | 0.0 | 65 |
| rpoB | YP_005892845.1 | DNA-directed RNA polymerase beta chain (RNAP beta subunit; transcriptase beta chain; RNA polymerase beta subunit) | NC_010611.6233925.p0 | Protein | 0.0 | 65 |
| rpoB | YP_005892845.1 | DNA-directed RNA polymerase beta chain (RNAP beta subunit; transcriptase beta chain; RNA polymerase beta subunit) | NC_011595.7060572.p0 | Protein | 0.0 | 65 |
| rpoB | YP_005892845.1 | DNA-directed RNA polymerase beta chain (RNAP beta subunit; transcriptase beta chain; RNA polymerase beta subunit) | NC_010410.6003841.p0 | Protein | 0.0 | 65 |
| rpoB | YP_005892845.1 | DNA-directed RNA polymerase beta chain (RNAP beta subunit; transcriptase beta chain; RNA polymerase beta subunit) | NC_011586.7046027.p0 | Protein | 0.0 | 65 |
| rpoB | YP_005892845.1 | DNA-directed RNA polymerase beta chain (RNAP beta subunit; transcriptase beta chain; RNA polymerase beta subunit) | CP001918.1.gene250.p | Protein | 0.0 | 64 |
| rpoB | YP_005892845.1 | DNA-directed RNA polymerase beta chain (RNAP beta subunit; transcriptase beta chain; RNA polymerase beta subunit) | CP001138.1.gene4362. | Protein | 0.0 | 64 |
| rpoB | YP_005892845.1 | DNA-directed RNA polymerase beta chain (RNAP beta subunit; transcriptase beta chain; RNA polymerase beta subunit) | CP004022.1.gene2794. | Protein | 0.0 | 64 |
| rpoB | YP_005892845.1 | DNA-directed RNA polymerase beta chain (RNAP beta subunit; transcriptase beta chain; RNA polymerase beta subunit) | CP000647.1.gene4402. | Protein | 0.0 | 64 |
| rpoB | YP_005892845.1 | DNA-directed RNA polymerase beta chain (RNAP beta subunit; transcriptase beta chain; RNA polymerase beta subunit) | CP000675.2.gene392.p | Protein | 0.0 | 64 |
