Gene Information

Name : PPUBIRD1_2215 (PPUBIRD1_2215)
Accession : YP_005930056.1
Strain : Pseudomonas putida BIRD-1
Genome accession: NC_017530
Putative virulence/resistance : Virulence
Product : ECF subfamily RNA polymerase sigma-24 factor
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2518924 - 2519436 bp
Length : 513 bp
Strand : +
Note : -

DNA sequence : 
ATGATCGACGCCGCGCCGCCACCGGAGCCTGGCCTGCCTGCCCTGTACCGGGAGCATCGCGGCTGGCTTGAAACCTGGCT
GCGCCGGCGTATGGGCAATGCCTGGGATGCCGCCGACCTCAGTCAGGATACCTTTCTGCGCATTCTGGCCAGCGCCCAGC
CGCTGGCAGACATACGCGAACCGCGTGCCTACCTGCTGACCGTGGGCAAGCGTTTGCTCAGCAACTTCCACCAGCGACGT
AGCTTGGAGCAGGCCTACCTTGATGCCTTGGCGCAGTTGCCCGAGCAACACGTGCCGTCGCCAGAACAGCGCTGGGTACT
GCTCGAAACCCTGCAAGCACTGGATGAGTTGCTCGACGGCCTCAAGCCGCCGATCCGCAAGGCCTTTCTCTGGAGCCAGC
TGGAAGGCTTGGGCTACGCCGAGATTGGCCAGCGCCTGGGCGTCTGCCAGCGCTCGGTGAAACGCTACATGGCGCAGGCT
TACGAACATTGCCTGTTGGCCGAGTTGCAATGA

Protein sequence : 
MIDAAPPPEPGLPALYREHRGWLETWLRRRMGNAWDAADLSQDTFLRILASAQPLADIREPRAYLLTVGKRLLSNFHQRR
SLEQAYLDALAQLPEQHVPSPEQRWVLLETLQALDELLDGLKPPIRKAFLWSQLEGLGYAEIGQRLGVCQRSVKRYMAQA
YEHCLLAELQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAL08458.1 FecI Virulence SRL Protein 9e-33 53

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PPUBIRD1_2215 YP_005930056.1 ECF subfamily RNA polymerase sigma-24 factor VFG1049 Protein 4e-33 53