Gene Information

Name : PPUBIRD1_3260 (PPUBIRD1_3260)
Accession : YP_005931064.1
Strain : Pseudomonas putida BIRD-1
Genome accession: NC_017530
Putative virulence/resistance : Virulence
Product : ECF subfamily RNA polymerase sigma-24 factor
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3642621 - 3643127 bp
Length : 507 bp
Strand : +
Note : -

DNA sequence : 
TTGGACAGCACATCGACCCGTAAACTGGGCTTTTTCTTCAGCGACCACCATCGCTGGTTGCTCCAGCACATCCAGAAACG
CCTGCGCAACCACACCGACGCCGAGGACACCGCCGCCGAAACGTTCTGCCAGATGCTCAGCGCACGTGTCGACCCAGACA
GCATTCAGCAGCCTCGCGCCTACCTCACCGTCATCGCCCGTCGGCTGATCTTCGATCGCCATCGCCGTCGCCAGCTCGAG
CAGGCCTACCTGGAGCACCTGGCTCTGCTGCCTGAGGCCGTAGCGCCATCGGCCGAGGAGCAACTGCTGCTGATCGAGGC
CCTGGTGAGCATCGATCAGGCACTGGACGGCTTGCCGGCAGTCGTCAAAGCCACCTTCCTATACAGCCAGCTCGACGGCA
TGCACTACGCCGACATCGCGGCAAAGCTGCAGATCAGTGAACGCTCTGTCAGCCGCTACATGAAACAGGCGCTGCGCCAA
TGTTACCTGTGCGAGGTGCAGGCATGA

Protein sequence : 
MDSTSTRKLGFFFSDHHRWLLQHIQKRLRNHTDAEDTAAETFCQMLSARVDPDSIQQPRAYLTVIARRLIFDRHRRRQLE
QAYLEHLALLPEAVAPSAEEQLLLIEALVSIDQALDGLPAVVKATFLYSQLDGMHYADIAAKLQISERSVSRYMKQALRQ
CYLCEVQA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAL08458.1 FecI Virulence SRL Protein 1e-25 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PPUBIRD1_3260 YP_005931064.1 ECF subfamily RNA polymerase sigma-24 factor VFG1049 Protein 5e-26 42