Gene Information

Name : PPUBIRD1_3578 (PPUBIRD1_3578)
Accession : YP_005931375.1
Strain : Pseudomonas putida BIRD-1
Genome accession: NC_017530
Putative virulence/resistance : Virulence
Product : ECF subfamily RNA polymerase sigma-24 factor
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4005250 - 4005750 bp
Length : 501 bp
Strand : +
Note : -

DNA sequence : 
ATGGCAACGCTCGATCCCCAGGCCCTGCACCAGCTGTACAGCGAAAACAACAGCTGGCTGAAGGGCTGGCTGCGCGCCCG
CCTGGGCAACGCCGCCGACGCTTCCGACCTGGCGCACGACACGTTCTTGCGGGTAATGACCGCGCGTAACCCGTTGCCGA
TCCGTGAGCCGCGCAGCTACCTCAGCGCTATCGCCCGCGCCCTTCTGATAGACAAAGCTCGCCGTCGCATCATCGAAAAA
GCTTACCTGCAGGCTCTAGCCCTGCGTCCGGAACCGGTCGAGGTGTCGCCGGAGGTGCGCTTGTCCATCATAGAAATGCT
GGTGGCCGTGGACAGCCTGCTCGACGAACTCGGCGCCAAGACCCGCGCCATCTTCCTTGCCGTTCAACTCGAAGGCCTGA
CCTACGGCGCTGCGGCCGAGCGCTTCGGCGTGTCGATCACCACCGTGAAGAATCACCTGATCAAGGCCATGACTCGCTGC
CTGCTGGCAGTCGAAGGCTGA

Protein sequence : 
MATLDPQALHQLYSENNSWLKGWLRARLGNAADASDLAHDTFLRVMTARNPLPIREPRSYLSAIARALLIDKARRRIIEK
AYLQALALRPEPVEVSPEVRLSIIEMLVAVDSLLDELGAKTRAIFLAVQLEGLTYGAAAERFGVSITTVKNHLIKAMTRC
LLAVEG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAL08458.1 FecI Virulence SRL Protein 9e-35 50

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PPUBIRD1_3578 YP_005931375.1 ECF subfamily RNA polymerase sigma-24 factor VFG1049 Protein 4e-35 50