Gene Information

Name : PPUBIRD1_0388 (PPUBIRD1_0388)
Accession : YP_005928288.1
Strain : Pseudomonas putida BIRD-1
Genome accession: NC_017530
Putative virulence/resistance : Virulence
Product : RNA polymerase sigma factor
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 453033 - 453551 bp
Length : 519 bp
Strand : -
Note : -

DNA sequence :

TTGTCTTCTGCACAAAGCCCACACGCCGATCTGGTCGGTGCGCTGTACCGCGACCACCGCGGCTGGCTGCTCGCCTGGCT
GCAACGCAGCATGGCCTGCCGCCAACGTGCTGAAGACCTGAGCCAGGACACCTTCGTGCGCCTGCTTGGTCGTGAGCAAC
TGGACACCCCCCGCGAACCCCGCGCGTTTCTGGCCGCCGTGGCCAAGGGGCTGATGTTCGACCACTTCCGCCGCGCTGCG
CTGGAGCAGGCTTACCTGGCCGAGCTGGCACTGATCCCTGAAGCTGAACAGCCCTCGCCAGAAATGCAGCACCTGATCCT
TGAAGACCTCAAAGCCATTGACCGCCTGCTCGGCAAGCTGTCGAGCAAGGCTCGCGCGGCGTTTCTGCACAGCCGTCTGG
ACGGCATGGGCCATGCCGAAATTGCCGAGCGCCTTGGCGTTTCGGTATCGCGGGTGCGCCAGTACATCGCCCAAGGGATG
CGCCAGTGCTACGTGGCCTTGTACGGGGAGCCGACGTGA

Protein sequence :

MSSAQSPHADLVGALYRDHRGWLLAWLQRSMACRQRAEDLSQDTFVRLLGREQLDTPREPRAFLAAVAKGLMFDHFRRAA
LEQAYLAELALIPEAEQPSPEMQHLILEDLKAIDRLLGKLSSKARAAFLHSRLDGMGHAEIAERLGVSVSRVRQYIAQGM
RQCYVALYGEPT

• Homologs from PAI DB

Gene	GenBank Accn	Product	Virulance or Resistance	PAI or REI	Alignment Type	E-val	Identity
unnamed	AAL08458.1	FecI	Virulence	SRL	Protein	6e-29	47

• Homologs from VFDB (virulence genes)

Gene	GenBank Accn	Product	ID of source DB	Alignment Type	E-val	Identity
PPUBIRD1_0388	YP_005928288.1	RNA polymerase sigma factor	VFG1049	Protein	2e-29	47