Gene Information

Name : PPUBIRD1_0746 (PPUBIRD1_0746)
Accession : YP_005928637.1
Strain : Pseudomonas putida BIRD-1
Genome accession: NC_017530
Putative virulence/resistance : Virulence
Product : ECF subfamily RNA polymerase sigma factor
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 846365 - 846880 bp
Length : 516 bp
Strand : -
Note : -

DNA sequence : 
ATGCAGATCAACGACACGCTCAAGCCCAACGAGGTCGCTCTGCTCTACCAGTCTCACCATGCCTGGTTGCGTGGCTGGTT
ACGCAGCCGGGTCGGTTGCAGTGAACATGCCGCAGACCTGGCCCAGGATACCTTCGTGCGGTTGTTGCGCGCCCGCCAGG
TGTCACCGCTCAAAGAACCCCGTGCCTACCTCAGCAGCATCGCCCGTGGCTTGATGATCGACCAGTTCCGACGCCGCGCG
CTGGAGCGGGCCTATCAGGAGAGCCTGGCTCACCTGCCCGAAGCAGAAGTGCCCAGCGAAGAGGATAAGCTTGTCCTCCT
CGATAGCCTGGAACGCCTCGACCGCGCCTTGCAGCAGTTGAAACCGCGCGTCCGCCAAGCGTTCCTGCTGGCCCAGCTAG
ACGGTTTGAGCATCGTGCAGGTTGCCCAACGTCTAGGAGTGTCCAGGGCCACTGTTGAGCGCGACCTGGCCAAAGCCTTG
GGCGCCTGCTACCGGTTGCGCTATGCCGATGCCTGA

Protein sequence : 
MQINDTLKPNEVALLYQSHHAWLRGWLRSRVGCSEHAADLAQDTFVRLLRARQVSPLKEPRAYLSSIARGLMIDQFRRRA
LERAYQESLAHLPEAEVPSEEDKLVLLDSLERLDRALQQLKPRVRQAFLLAQLDGLSIVQVAQRLGVSRATVERDLAKAL
GACYRLRYADA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAL08458.1 FecI Virulence SRL Protein 3e-34 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PPUBIRD1_0746 YP_005928637.1 ECF subfamily RNA polymerase sigma factor VFG1049 Protein 1e-34 44