Gene Information

Name : PPUBIRD1_0866 (PPUBIRD1_0866)
Accession : YP_005928755.1
Strain : Pseudomonas putida BIRD-1
Genome accession: NC_017530
Putative virulence/resistance : Virulence
Product : ECF subfamily RNA polymerase sigma-24 factor
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 990945 - 991472 bp
Length : 528 bp
Strand : +
Note : -

DNA sequence : 
ATGCCCGTAGCCGACTCACCGAGCCCGTACCCGCTTGAACAGCTGTACAGCGAGCACCATGGTTGGCTTTTCAGCTGGCT
ACGTCGCAAGCTACGTTGTTCGCACAGCGCAGCCGACCTGGCCCAGGACACCTTCGTGCGCATCCTGGCCTCGCGTGATG
CCTTGCTGGGTATGCGCGAGCCACGCGCCTACCTCAGTACCACTGCACGCCGCCTGTTGATCGACCGGGTGCGCCGACAG
CAAATCGAAGAGGCCTACCTCAGCGAACTTGCCTTGGCTGCCGAGGCCCTGGAGGGGCACCAATCTCCCGAAAGCGTCCT
CATCACCCTCGAAGCGCTGGAGCAGATCGCTTTCCTGCTGGAAGGCCTGCACGTGAACGCTCGCGAGGCCTTCGTCGGTT
ACTACCTGGACGACCTGACCCAGCCTCAGATTGCCAAACGCCTGCAGATTTCCCCACGCATGGTGCGCAAGTACCTGGCC
CAGGCCCTGATCCATTGCCACCGCACGCTGGACATTGCCGAACCGTGA

Protein sequence : 
MPVADSPSPYPLEQLYSEHHGWLFSWLRRKLRCSHSAADLAQDTFVRILASRDALLGMREPRAYLSTTARRLLIDRVRRQ
QIEEAYLSELALAAEALEGHQSPESVLITLEALEQIAFLLEGLHVNAREAFVGYYLDDLTQPQIAKRLQISPRMVRKYLA
QALIHCHRTLDIAEP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAL08458.1 FecI Virulence SRL Protein 5e-24 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PPUBIRD1_0866 YP_005928755.1 ECF subfamily RNA polymerase sigma-24 factor VFG1049 Protein 2e-24 41