Gene Information

Name : PAJ_1258 (PAJ_1258)
Accession : YP_005934134.1
Strain : Pantoea ananatis AJ13355
Genome accession: NC_017531
Putative virulence/resistance : Virulence
Product : hypothetical protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1517461 - 1519623 bp
Length : 2163 bp
Strand : +
Note : similar to Burkholderia glumae BGR1 (NCBI:YP_002909832.1)

DNA sequence :
ATGAGTTCCTCTTATAGCTCAAATAAAAAAATGAATGAAAACCATTATACGGAAAAAGAAGTAGAACAAGATTCGGGTGT
CGAAGCTTTAGTTTTAATAGCCAGGTATCATAAAATCGCTGCTGATTCACAACAAATCAGACATTTATCAGGTTCAGGTA
AAAAACAGCTTACCGATGGTGACCTCATTCTTGCCGCGCGAACAATGGGGCTTAAATCCCGTAAAGTTACCGTGCGGCCT
GAACGTTTAGCTAAAACACCTTTTCCTGCACTGGCTCTGGATCGGCTTGGTCGCCATTTTATTGTTACGGCATGCGATGG
GGACAGGGTATTGGTTTTGGAGCCTGATGCTGGAAAACCTACAGTCATCCTTTCAGAAGTGCTCTGGCAGCGCTGCAATG
GCGATTTTCTTCTGTTTGCTTCCAGAGCATCTTTAACGGGTGAACTGGCGAAATTCGATTTTACGTGGTTTATGCCTGCG
ATAGTCAAGTACAGGAAAATTTTATTAGAAGTCTTTTTTGTTTCTGCGCTCATACAACTCTTTGGTCTTGCATCACCACT
TATGTTCCAGGTTGTAATGGATAAAGTGCTGGTAAATAATGCTCTCTCAACGCTTAATGTGGTCTGTATAGGGCTGTTGG
TCAGCGGTATCGCTGAAGTTTTACTGACTGGCCTGCGGAATTATGTTTTCTCACATACCACTAACCGCATGGATGTTGAA
CTGGGTTCGCGTATTTTCCGACATATACTTGCGTTACCTGTCGGGTATTACGCAACGCGCCGGGTTGGTGACACTGTCGC
ACGCGTAAAAGAGCTTGAGAATATCCGCAATTTCCTGACCGGTCAGGCCCTTACAGCGATAATAGACAGCATATTTTCGG
TGGTTTTTGTCGCCGTGATGTGCCTTTACAGCATAAAGCTTACACTCATTGTGCTGCTGTCTTTACCTGTCTATGTCATT
ATTACAACAGTTATCATCCCGGCTTTCAGACGACGTCTTAATGAAAAATACGCGCGTGGGGCTGATAACCAGTCATTTTT
AGTTGAAACCGTTTCCGCAATAGAAACTGTCAAATCATCTGCAGTTGAGCCTTTGTTTATTCGTCAGTGGGATAATTTAC
TGGCTGGTTATGTTGCTGCATCATTTCGTGTCAGTAATTTAGGAAATATTGGGCAGCAGTTAGTTCAGTTTGTTGGGAAA
ATAGTCACTATTTTAACCCTTTTCTTAGGAGCGAAACTGGTCATATCGGGCGCACTATCCGTAGGCGCTCTGATAGCTTT
CAATATGATGTCTCAACGCGTCTCTGCGCCGATTCTGCGCCTGGCACAGCTATGGCAGGATTTTCAGCAGGTAGGCATTT
CGATGCAACGGTTAGGTGATATTCTCAATACCCGTACAGAAAACTTACAAGGCCGGAATTCTCAGCCCTCTCTGAAGGGT
GCCATTCGTTTTGAGAATGTAAGGTTCAGATATAAACCTGAAGCACCTGCAGTTCTGAATAATATCTCTTTTGATATTGA
GCCAGGAAAAGTTATTGGCGTTGTCGGACGTTCAGGATCAGGAAAAAGTACGCTCACTAAATTAATTCAGCGTCTCTATC
TTCCCGAATCTGGCCGTGTCTGGATCGATGGAACCGACGTAGCCCTGGCTGACCCCTCATGGTTACGCAGACAAATTGGA
GTGGTCCTTCAGGAAAACATACTTTTTGGTAGATCAATTCGTGAAAATATAGCGCTGGCTGATCCTGGCATATCTTTAGA
ATCAGTTATAAACGCCGCCAAACTTGCTGGCGCTCATGATTTTATCAGTGAAATGTCTGAGGGTTATGACACACGAATCG
GAGAACACGGAAGTGGGCTGTCAGGAGGCCAGCGTCAGCGTATTGCTATTGCACGCGCGTTGATTACGAACCCACGAATT
CTCATCTTCGATGAGGCAACGAGCGCTCTCGATTTTGAAACAGAACGGGTGATTCACAAAAACATGCAGGCCATATGTCA
GGGCCGAACAGTTATTATCATCGCTCACCGACTGACTGCAGTAAGAAATTCTGACACCATTTTAGTTATGGAGAAAGGCC
TGATAGTAGAGCAGGGCAACCATTCTCAACTAATTGAAGAAAACGGTCTGTACAGTCACTTGGTTTCCCTTCAGCATGCT
TAA

Protein sequence :
MSSSYSSNKKMNENHYTEKEVEQDSGVEALVLIARYHKIAADSQQIRHLSGSGKKQLTDGDLILAARTMGLKSRKVTVRP
ERLAKTPFPALALDRLGRHFIVTACDGDRVLVLEPDAGKPTVILSEVLWQRCNGDFLLFASRASLTGELAKFDFTWFMPA
IVKYRKILLEVFFVSALIQLFGLASPLMFQVVMDKVLVNNALSTLNVVCIGLLVSGIAEVLLTGLRNYVFSHTTNRMDVE
LGSRIFRHILALPVGYYATRRVGDTVARVKELENIRNFLTGQALTAIIDSIFSVVFVAVMCLYSIKLTLIVLLSLPVYVI
ITTVIIPAFRRRLNEKYARGADNQSFLVETVSAIETVKSSAVEPLFIRQWDNLLAGYVAASFRVSNLGNIGQQLVQFVGK
IVTILTLFLGAKLVISGALSVGALIAFNMMSQRVSAPILRLAQLWQDFQQVGISMQRLGDILNTRTENLQGRNSQPSLKG
AIRFENVRFRYKPEAPAVLNNISFDIEPGKVIGVVGRSGSGKSTLTKLIQRLYLPESGRVWIDGTDVALADPSWLRRQIG
VVLQENILFGRSIRENIALADPGISLESVINAAKLAGAHDFISEMSEGYDTRIGEHGSGLSGGQRQRIAIARALITNPRI
LIFDEATSALDFETERVIHKNMQAICQGRTVIIIAHRLTAVRNSDTILVMEKGLIVEQGNHSQLIEENGLYSHLVSLQHA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hlyB NP_755448.1 hemolysin B Virulence PAI I CFT073 Protein 0.0 58
hlyB CAD33760.1 hemolysin B Virulence PAI I 536 Protein 0.0 58
hlyB CAD42038.1 HlyB protein Virulence PAI II 536 Protein 0.0 58

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PAJ_1258 YP_005934134.1 hypothetical protein VFG1501 Protein 0.0 58
PAJ_1258 YP_005934134.1 hypothetical protein VFG0907 Protein 0.0 58
PAJ_1258 YP_005934134.1 hypothetical protein VFG1557 Protein 0.0 58
PAJ_1258 YP_005934134.1 hypothetical protein VFG0841 Protein 0.0 57
PAJ_1258 YP_005934134.1 hypothetical protein VFG1269 Protein 0.0 54