Gene Information

Name : fecI (PAJ_1882)
Accession : YP_005934758.1
Strain : Pantoea ananatis AJ13355
Genome accession: NC_017531
Putative virulence/resistance : Virulence
Product : RNA polymerase sigma factor FecI
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2277210 - 2277761 bp
Length : 552 bp
Strand : +
Note : similar to Pectobacterium atrosepticum SCRI1043, RNA polymerase sigma factor (NCBI: YP_049380.1) COG: transcription subcellular localization as predicted by Psort 2.0: cytoplasmic

DNA sequence :

ATGGGGGACATTATGCCTGCCGACATGACCGATCGTTCAGATATATTAACGCTTATTTTTCGCAGCGATTATCGCTGGCT
GACGGATAAATTACGGCGTCGAATTAGCTACGGCACCATGGCAGAAGATATCGCTTCTGAAGCGTTTTTACGTCTGGCGG
CAATTCCGGAACTGCCCCACATTCGCGAGCCGAGGGCCATGCTGACGACACTGGCCCAGCGCGTGTTATATGAAAACTGG
CGACGCCGCGACCTTGAACAGGCTTATCTCAAAGCTCTGGCAGATAGCCCGCAGCATTGTCACCCCTCGCCCGAAGAACT
GGAGATGGTGATGGAGTCTTTACTGGCTATCGATCGCGCTCTGGATGGCTTGTCCGTAAATGCGAGAAAGGCCTTTTTGC
TCAACCAACTGGATGGCATGACCTATGCTGAAATCGCTAAAGAGCTTGGCGTATCAGCCAGTATGGTGCGTAAATATGTG
GCTAAAGCACTGACGAATTGTTATCTGGTGGCTCAGGGTCAATCTGACCCGATGGCGGGACATCACAAATGA

Protein sequence :

MGDIMPADMTDRSDILTLIFRSDYRWLTDKLRRRISYGTMAEDIASEAFLRLAAIPELPHIREPRAMLTTLAQRVLYENW
RRRDLEQAYLKALADSPQHCHPSPEELEMVMESLLAIDRALDGLSVNARKAFLLNQLDGMTYAEIAKELGVSASMVRKYV
AKALTNCYLVAQGQSDPMAGHHK

• Homologs from PAI DB

Gene	GenBank Accn	Product	Virulance or Resistance	PAI or REI	Alignment Type	E-val	Identity
unnamed	AAL08458.1	FecI	Virulence	SRL	Protein	6e-28	48

• Homologs from VFDB (virulence genes)

Gene	GenBank Accn	Product	ID of source DB	Alignment Type	E-val	Identity
fecI	YP_005934758.1	RNA polymerase sigma factor FecI	VFG1049	Protein	2e-28	48