|
Name : rpoB (PAJ_3376) Accession : YP_005936252.1 Strain : Pantoea ananatis AJ13355 Genome accession: NC_017531 Putative virulence/resistance : Unknown Product : DNA-directed RNA polymerase beta chain RpoB Function : - COG functional category : - COG ID : - EC number : - Position : 4034948 - 4038976 bp Length : 4029 bp Strand : + Note : similar to Pantoea sp. At-9b, DNA-directed RNA polymerase, beta subunit (NCBI: ZP_05732282.1) COG: transcription subcellular localization as predicted by Psort 2.0: cytoplasmic DNA sequence : ATGGTTTACTCCTATACCGAGAAAAAACGTATTCGTAAGGATTTTGGTAAACGTCCGCAAGTTTTGGACATACCTTATCT CCTTTCCATCCAGCTTGATTCGTTTCAGAAGTTTATCGAGCAAGATCCAGAAGGTCAGTACGGACTGGAAGCTGCATTCC GCTCTGTATTCCCTATTGCGAGCTACAGCGGCAACTCTGAGTTGCAGTATGTCAGCTATCGCTTAGGTGAACCTGTCTTT GACGTGAAAGAGTGTCAGATCCGTGGCGTGACCTACTCGGCACCGCTGCGCGTGAAACTGCGTCTGGTGATCTATGAGCG CGAAGCGCCAGAAGGCACAGTAAAAGACATTAAAGAACAAGAAGTCTACATGGGTGAAATTCCACTCATGACTGACAACG GTACCTTTGTTATCAACGGTACTGAACGTGTTATCGTTTCTCAGCTGCATCGTAGTCCTGGCGTGTTCTTTGACAGCGAT AAGGGTAAAACCCACTCCTCGGGTAAAGTGCTGTATAACGCACGTATCATCCCTTACCGTGGTTCATGGCTCGACTTCGA GTTTGACCCGAAAGACAACCTTTTCGTCCGTATTGACCGTCGTCGTAAGCTGCCGGCCAGTATCATTCTGCGCGCACTGC ATTACACCACTGCTCAAATTCTCGACGTGTTCTTCGAGAAAGTGGTGTACGAAATTCGTGACAACAAGCTGCAGATGGAA CTGGTGCCAGAGCGCCTGCGCGGTGAAACCGCGACTTTCGATATCGAATCGAATGGCACGGTCTACGTTGAGAAAGGGCG TCGCATCACTGCGCGTCATATTCGTCAGCTGGAAAAAGACGGTATCCAACACATCGAAGTCCCTGTGGAATACATTGCGG GCAAAGTGGTCTCTAAAGACTACATCGATGAGAATACCGGTGAGCTGATCGTTGCGGCCAACATGGAACTGTCGCTGGAT CTGCTGGCGAAGCTGAGCCAGTCGGGTCACAAGCGCATTGAAACGCTGTTCACCAACGATTTGGATCACGGCCCATACAT CTCCGAGACGCTGCGCGTTGACCCAACCAACGATCGCCTGAGCGCGCTGGTTGAGATCTACCGCATGATGCGTCCTGGTG AGCCGCCAACGCGTGAAGCTGCAGAGAACCTGTTTGAGAACCTGTTCTTCTCTGAAGATCGTTACGATCTTTCTGCAGTC GGCCGCATGAAGTTCAACCGTTCATTGCTGCGTGATGAGATCGAAGGTTCAGGTATCCTGAGCAAAGAAGACATCATCGA AGTGATGAAAAAACTGATCGACATCCGTAACGGTAAAGGCGAAGTGGACGATATCGACCACCTCGGTAACCGTCGTATTC GTTCAGTCGGTGAAATGGCTGAAAACCAGTTCCGCGTCGGTCTGGTCCGTGTTGAGCGTGCAGTGAAAGAGCGTCTTTCT CTGGGCGACCTCGATACGCTGATGCCACAGGACATGATCAACGCCAAGCCAATTTCGGCGGCGGTGAAAGAGTTCTTTGG TTCCAGCCAGCTGTCTCAGTTTATGGATCAGAACAACCCCTTGTCAGAGATTACGCACAAGCGTCGTATCTCTGCTCTGG GCCCGGGCGGTTTAACCCGTGAGCGTGCCGGCTTCGAAGTGCGTGACGTACACCCAACGCACTACGGTCGTGTCTGCCCA ATCGAAACCCCTGAAGGTCCGAACATCGGTCTGATCAACTCCTTGTCTGTGTACGCGCAGACGAACGAGTACGGTTTCCT GGAAACCCCTTATCGTCGCGTTATTGACGGTGTGGTTTCCGATGAAATTCATTACCTTTCTGCAATCGAAGAAGGTAACT ACGTTATCGCGCAGGCGAACACCAATCTGTCAGAAGAAGGTGCGTTCGTTGATGACCTGGTCACCTGCCGTAGCAAAGGC GAATCAAGTCTGTTCAGCCGCGATCAGGTTGACTACATGGACGTTTCCACCCAGCAGGTGGTTTCTGTCGGTGCGTCACT GATTCCGTTCCTGGAACACGATGATGCTAACCGCGCCCTGATGGGTGCGAACATGCAACGTCAGGCCGTTCCTACTCTGC GTGCTGATAAGCCGCTGGTAGGTACCGGTATGGAGCGCGCTGTAGCCGTTGACTCCGGTGTTACCGCTGTTGCGAAACGT GGCGGTACCGTTCAGTACGTTGATGCATCACGTATCGTTATTAAAGTTAACGAAGACGAGATGTACCCGGGCGAAGCGGG TATCGACATCTACAACCTGACCAAATACACCCGTTCTAACCAGAACACCTGTATCAATCAGATGCCGTGTGTCTCTCTGG GTGAGCCCGTTGAACGTGGTGATGTGCTGGCTGACGGCCCGTCTACCGATCTCGGTGAGCTGGCGCTGGGTCAGAACATG CGCGTCGCGTTCATGCCGTGGAACGGTTACAACTTCGAAGACTCCATTTTAGTCTCCGAGCGCGTAGTGCAGGAAGATCG CTTCACCACCATCCACATTCAGGAACTGGCCTGTGTGTCTCGTGACACCAAGCTGGGGCCAGAAGAGATCACGGCTGACA TCCCGAACGTGGGCGAAGCTGCACTCTCTAAACTGGATGAGTCCGGTATCGTTTATATCGGTGCTGAAGTGACCGGCGGT GACATTCTGGTTGGTAAGGTGACGCCAAAAGGCGAAACCCAGCTGACGCCAGAAGAGAAGCTGCTGCGTGCGATCTTCGG TGAGAAAGCGTCTGACGTTAAAGACTCTTCTCTGCGTGTACCGAACGGTGTTTCCGGTACCGTTATCGACGTTCAGGTCT TCACCCGCGATGGCGTGGAAAAAGACAAGCGTGCGCTGGAAATCGAAGAAATGCAGCTGAAGCAGGCCAAGAAAGACCTG TCTGAAGAGCTGCAGATCCTGGAAGCGGGCCTGTTTAGCCGTATCCAGTCTGTCCTGATTTCCGGTGGCGTTGAAGCAGA CAAACTGGACAAGCTGCCGCGTGAGCGTTGGCTGGAGCTGGGTCTGACTGACGAAGCCAAGCAAAACCAGCTGGAGCAGC TGGCAGAGCAGTACGACGAACTGAAGCACGAGTTTGAGAAAAAACTCGAAGGTAAGCGTCGTAAAATCACCCAAGGCGAT GATCTGGCACCTGGCGTGCTGAAAATCGTTAAGGTTTATCTGGCTGTTAAACGTCAGATTCAGCCTGGTGATAAAATGGC AGGTCGTCACGGTAACAAAGGTGTTATCTCTAAGATCAACCCAATCGAAGACATGCCTTACGATGAGAACGGTACGCCGG TCGATATCGTACTGAACCCGCTGGGCGTACCTTCGCGTATGAACATCGGTCAGATCCTTGAGACTCACCTGGGGATGGCA GCGAAAGGTATCGGCGAGAAGATCAACGCGATGCTGAAAAAGCAGGAAGAAGTCGCCAAGCTGCGCGAATTCATCCAGCG TGCTTACGATCTGGGCACCGATGTGCGTCAGAAAGTTGACCTGAACACCTTTACTGATGACGAAGTTCTGCGCCTGGCTG AGAACCTGAAAAAAGGTATGCCAATTGCCACGCCGGTGTTTGATGGTGCGAAAGAGAGCGAAATCAAAGAGCTGTTAGAG CTCGGCGGTCTGCCTTCTTCCGGTCAGATTACCCTGTTTGATGGCCGTACTGGTGAGCAGTTCGAACGTCAGGTAACCGT AGGCTATATGTACATGCTGAAACTCAACCACCTGGTTGATGACAAGATGCACGCACGTTCTACCGGTTCCTATAGCCTCG TTACTCAGCAGCCGCTGGGTGGTAAGGCACAGTTCGGTGGTCAGCGCTTCGGTGAGATGGAAGTATGGGCGCTGGAAGCT TACGGTGCTGCGTATACCCTTCAGGAAATGCTTACCGTTAAGTCTGATGACGTCAACGGCCGTACCAAGATGTATAAGAA CATCGTGGATGGCAACCATCAGATGGAACCTGGCATGCCAGAATCGTTCAACGTACTGTTGAAAGAGATTCGCTCGCTGG GTATCAACATCGAGCTGGAAGACGAGTAA Protein sequence : MVYSYTEKKRIRKDFGKRPQVLDIPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIASYSGNSELQYVSYRLGEPVF DVKECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSD KGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPASIILRALHYTTAQILDVFFEKVVYEIRDNKLQME LVPERLRGETATFDIESNGTVYVEKGRRITARHIRQLEKDGIQHIEVPVEYIAGKVVSKDYIDENTGELIVAANMELSLD LLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAENLFENLFFSEDRYDLSAV GRMKFNRSLLRDEIEGSGILSKEDIIEVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS LGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCP IETPEGPNIGLINSLSVYAQTNEYGFLETPYRRVIDGVVSDEIHYLSAIEEGNYVIAQANTNLSEEGAFVDDLVTCRSKG ESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKR GGTVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNM RVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGG DILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDL SEELQILEAGLFSRIQSVLISGGVEADKLDKLPRERWLELGLTDEAKQNQLEQLAEQYDELKHEFEKKLEGKRRKITQGD DLAPGVLKIVKVYLAVKRQIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMA AKGIGEKINAMLKKQEEVAKLREFIQRAYDLGTDVRQKVDLNTFTDDEVLRLAENLKKGMPIATPVFDGAKESEIKELLE LGGLPSSGQITLFDGRTGEQFERQVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEA YGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 70 |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 70 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| rpoB | YP_005936252.1 | DNA-directed RNA polymerase beta chain RpoB | CP001138.1.gene4362. | Protein | 0.0 | 97 |
| rpoB | YP_005936252.1 | DNA-directed RNA polymerase beta chain RpoB | CP001918.1.gene250.p | Protein | 0.0 | 97 |
| rpoB | YP_005936252.1 | DNA-directed RNA polymerase beta chain RpoB | CP000647.1.gene4402. | Protein | 0.0 | 97 |
| rpoB | YP_005936252.1 | DNA-directed RNA polymerase beta chain RpoB | CP000034.1.gene3741. | Protein | 0.0 | 96 |
| rpoB | YP_005936252.1 | DNA-directed RNA polymerase beta chain RpoB | NC_002695.1.914942.p | Protein | 0.0 | 96 |
| rpoB | YP_005936252.1 | DNA-directed RNA polymerase beta chain RpoB | CP004022.1.gene2794. | Protein | 0.0 | 93 |
| rpoB | YP_005936252.1 | DNA-directed RNA polymerase beta chain RpoB | NC_002516.2.881699.p | Protein | 0.0 | 73 |
| rpoB | YP_005936252.1 | DNA-directed RNA polymerase beta chain RpoB | NC_009085.4918494.p0 | Protein | 0.0 | 70 |
| rpoB | YP_005936252.1 | DNA-directed RNA polymerase beta chain RpoB | NC_010410.6003841.p0 | Protein | 0.0 | 70 |
| rpoB | YP_005936252.1 | DNA-directed RNA polymerase beta chain RpoB | NC_011586.7046027.p0 | Protein | 0.0 | 70 |
| rpoB | YP_005936252.1 | DNA-directed RNA polymerase beta chain RpoB | NC_010400.5987325.p0 | Protein | 0.0 | 70 |
| rpoB | YP_005936252.1 | DNA-directed RNA polymerase beta chain RpoB | NC_010611.6233925.p0 | Protein | 0.0 | 70 |
| rpoB | YP_005936252.1 | DNA-directed RNA polymerase beta chain RpoB | NC_011595.7060572.p0 | Protein | 0.0 | 70 |
| rpoB | YP_005936252.1 | DNA-directed RNA polymerase beta chain RpoB | CP000675.2.gene392.p | Protein | 0.0 | 69 |
| rpoB | YP_005936252.1 | DNA-directed RNA polymerase beta chain RpoB | NC_008702.1.4609796. | Protein | 0.0 | 66 |
| rpoB | YP_005936252.1 | DNA-directed RNA polymerase beta chain RpoB | CP002695.1.gene18.p0 | Protein | 0.0 | 65 |
| rpoB | YP_005936252.1 | DNA-directed RNA polymerase beta chain RpoB | NC_011035.1.6448762. | Protein | 0.0 | 64 |
