Gene Information

Name : lolD (PAJ_0851)
Accession : YP_005933727.1
Strain : Pantoea ananatis AJ13355
Genome accession: NC_017531
Putative virulence/resistance : Resistance
Product : lipoprotein-releasing system ATP- binding protein LolD
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1008577 - 1009104 bp
Length : 528 bp
Strand : +
Note : similar to Pantoea sp. At-9b, lipoprotein releasing system, ATP-binding protein (NCBI: ZP_05728410.1) COG: defense mechanisms subcellular localization as predicted by Psort 2.0: inner membrane

DNA sequence : 
ATGAGTAACTCTCCTTTGTTGCAGTGCCGTGACCTGTGCAAACGCTATCAGGAAGGCAGCGTCCAGACCGACGTACTGCG
CAATGTGACCTTTGATGTGCAACCTGGTGAACTGATGGCGATTGTTGGCAGTTCGGGTTCAGGTAAAAGTACCCTGTTGC
ACCTGCTGGGCGGGCTGGATGCGCCCACCTCGGGAGAAGTGGTGTTTGACGGCCGTTCGCTAAACGGGATGTCATCCTCT
GCTAAAGCGGAGTTACGTAATCGTGAGCTCGGCTTTATCTATCAGTTTCACCATCTGCTGCCTGATTTCACCGCGCTGGA
AAATGTCGCCATGCCGTTACTGATCGGCAAAGTGGCTAAAGGCGAAGCGCAGACCCGCGCGCGCGAAATGCTGGCGGCGG
TCGGGCTGGAACACCGTGCGGCGCATCGCCCCTCGGAACTCTCTGGCGGTGAACGTCAACGTGTGGCTATCGCCCGTGCG
CTGGTAAACCGCCCGCGCCTGGTCATGGCCGATGAGCCAACGGGGTAA

Protein sequence : 
MSNSPLLQCRDLCKRYQEGSVQTDVLRNVTFDVQPGELMAIVGSSGSGKSTLLHLLGGLDAPTSGEVVFDGRSLNGMSSS
AKAELRNRELGFIYQFHHLLPDFTALENVAMPLLIGKVAKGEAQTRAREMLAAVGLEHRAAHRPSELSGGERQRVAIARA
LVNRPRLVMADEPTG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 7e-23 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
lolD YP_005933727.1 lipoprotein-releasing system ATP- binding protein LolD NC_012469.1.7686878. Protein 7e-33 46
lolD YP_005933727.1 lipoprotein-releasing system ATP- binding protein LolD CP001581.1.gene798.p Protein 1e-32 44
lolD YP_005933727.1 lipoprotein-releasing system ATP- binding protein LolD NC_012469.1.7686946. Protein 2e-17 41