Gene Information

Name : NCGM2_2829 (NCGM2_2829)
Accession : YP_005981066.1
Strain : Pseudomonas aeruginosa NCGM2.S1
Genome accession: NC_017549
Putative virulence/resistance : Virulence
Product : ECF subfamily RNA polymerase sigma-70 factor
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3017728 - 3018234 bp
Length : 507 bp
Strand : -
Note : similar to GI:116049864; similar to PA14_39800 of P. aeruginosa UCBPP-PA14

DNA sequence :
ATGCCGCCGGCCGACGCCTCCCTGCACGACGCTGTGAGCCATCTCTATCAGGACCACCATGGCTGGCTGCAAGGCTGGTT
GCGGCGACGCCTGGGCTGCGCGGAAAACGCCGCCGACCTGGCCCAGGACACCTTCGCCCGCCTGCTCGCCTCGCGCCGGG
TACTGGATGCGCGCGAACCGCGCGCCTACCTGACCACCGTCGCCAAGGGGCTGATGATCAACTGGTTCCAGCGCCAGTCG
CTGGAGCGCGCCTACCTCGATGCCCTGGCCAACCTCCCGGAAGACCTCGCGCCGCCGCCGGAACAGCGGTTGATGGTGCT
GGAAACCCTGCATGAAGTAGACGCCCTGCTCGGCAGCCTGCCGGACAGGGTCCGCCAGGCGTTTCTCCTGGCGCAGATCG
AAGGCCTGAAGTACGAAGCCATCGCCGAGCGCCTGGGCGTGTCCCTGGGCTCGGTCAAGCGCTACATGCAGCAGGCCTTC
CGCCAGTGCCTGGAGCTGATGGAATGA

Protein sequence :
MPPADASLHDAVSHLYQDHHGWLQGWLRRRLGCAENAADLAQDTFARLLASRRVLDAREPRAYLTTVAKGLMINWFQRQS
LERAYLDALANLPEDLAPPPEQRLMVLETLHEVDALLGSLPDRVRQAFLLAQIEGLKYEAIAERLGVSLGSVKRYMQQAF
RQCLELME

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAL08458.1 FecI Virulence SRL Protein 2e-36 50

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
NCGM2_2829 YP_005981066.1 ECF subfamily RNA polymerase sigma-70 factor VFG1049 Protein 7e-37 50