Gene Information

Name : NCGM2_3027 (NCGM2_3027)
Accession : YP_005981260.1
Strain : Pseudomonas aeruginosa NCGM2.S1
Genome accession: NC_017549
Putative virulence/resistance : Virulence
Product : RNA polymerase sigma factor
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3223855 - 3224361 bp
Length : 507 bp
Strand : +
Note : similar to GI:116050001; similar to PA14_37990 of P. aeruginosa UCBPP-PA14

DNA sequence :

ATGGGCATGGATCAGACACGCAATCGCCTCGTCGGCCTGATGTTCCAGAACGATTATTCCTGGCTGAGCGGGCGCCTGCG
GCGCTACCTCGGCTGCCCCCACAGCGCCGAGGACATCGCCTCGGAAACCTTCCTCAAGGTCCTCGCCCTGCCGGACCCGG
CAAGCATCCGCGAGCCGCGCGCGCTGCTCACCACCATCGCCCGCCGGTTGATGTACGACGGCTGGCGGCGCCAGGACCTG
GAACGCGCCTACCTGGAAAGCCTGGCCGGGCTTCCGGAGGCCCTCGCGCCGTCCGCCGAGGAGCAGGCCCAGGTGGTGGA
AACCCTGCTGCGCCTGGAGCGCATGCTCGCCGGGCTGTCGCCGAAGGCCCGCGCCGCCTTCATCCATAGCCAGATCGGCG
GACTGACCTACGTGGAGATCGCCGGCTTGCTGGAGGTTTCCGTCAGCCGCATCCACCAGTACATGGTCGAGGGCTTCAAG
CAGTGCTACCAGGTGCTTGCCGAATGA

Protein sequence :

MGMDQTRNRLVGLMFQNDYSWLSGRLRRYLGCPHSAEDIASETFLKVLALPDPASIREPRALLTTIARRLMYDGWRRQDL
ERAYLESLAGLPEALAPSAEEQAQVVETLLRLERMLAGLSPKARAAFIHSQIGGLTYVEIAGLLEVSVSRIHQYMVEGFK
QCYQVLAE

• Homologs from PAI DB

Gene	GenBank Accn	Product	Virulance or Resistance	PAI or REI	Alignment Type	E-val	Identity
unnamed	AAL08458.1	FecI	Virulence	SRL	Protein	3e-28	46

• Homologs from VFDB (virulence genes)

Gene	GenBank Accn	Product	ID of source DB	Alignment Type	E-val	Identity
NCGM2_3027	YP_005981260.1	RNA polymerase sigma factor	VFG1049	Protein	1e-28	46