Gene Information

Name : NCGM2_0629 (NCGM2_0629)
Accession : YP_005978902.1
Strain : Pseudomonas aeruginosa NCGM2.S1
Genome accession: NC_017549
Putative virulence/resistance : Virulence
Product : RNA polymerase sigma factor
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 706771 - 707307 bp
Length : 537 bp
Strand : +
Note : similar to GI:116053045; similar to PA14_64700 of P. aeruginosa UCBPP-PA14

DNA sequence :

ATGAATGCGCCAAGCCCCTGCCTGCAAGCGGACCGCGACTGCGTCGCCACGCTCTACCGTGAAAACCATGCCTGGTTGCG
CAACTGGCTGGCCTACCGCCTTCGCTCCTGGGGACGTGGCGTGGCCGACGACCTGGCCCACGACACTTTCCTGCGCATCC
TCGCCAGCCGCGATGGCGGCCAGCGTGACGCGATCCGTCAGCCGCGCGCCTACCTCACCCGCATCGCCAACTGCGTGCTG
GTCAGCTGGCGCCGTCGCCAATCGCTGGAACTCGCCTGGCTGGAGGCCCTGGCCACGTTGCCCGAGCCGTTGCAGCCGTC
GCCGGAACAACAGAGTGTGATCGTCGAGACCCTGCACGAGATCGACGCGCTGCTCGACACCCTGCGACCGCGGGTGAAAC
AGGCATTCCTGATGGCGACGCTGGACGGCATGAAGCAGAAGGACATCGCCCAGGCACTGGGCGTCGCGCTGCCGACGGTG
AAGAAGTTCATCCACCAGGCCTACGTGACCTGCCTGAGCCTGATGCCCGATGAATGA

Protein sequence :

MNAPSPCLQADRDCVATLYRENHAWLRNWLAYRLRSWGRGVADDLAHDTFLRILASRDGGQRDAIRQPRAYLTRIANCVL
VSWRRRQSLELAWLEALATLPEPLQPSPEQQSVIVETLHEIDALLDTLRPRVKQAFLMATLDGMKQKDIAQALGVALPTV
KKFIHQAYVTCLSLMPDE

• Homologs from PAI DB

Gene	GenBank Accn	Product	Virulance or Resistance	PAI or REI	Alignment Type	E-val	Identity
unnamed	AAL08458.1	FecI	Virulence	SRL	Protein	1e-18	43

• Homologs from VFDB (virulence genes)

Gene	GenBank Accn	Product	ID of source DB	Alignment Type	E-val	Identity
NCGM2_0629	YP_005978902.1	RNA polymerase sigma factor	VFG1049	Protein	4e-19	43