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Name : Sput200_0158 (Sput200_0158) Accession : YP_006008113.1 Strain : Shewanella putrefaciens 200 Genome accession: NC_017566 Putative virulence/resistance : Unknown Product : DNA-directed RNA polymerase subunit beta Function : - COG functional category : - COG ID : - EC number : - Position : 179919 - 183950 bp Length : 4032 bp Strand : + Note : KEGG: shw:Sputw3181_0149 DNA-directed RNA polymerase subunit beta; TIGRFAM: DNA-directed RNA polymerase, beta subunit; PFAM: RNA polymerase Rpb2 domain 6; RNA polymerase Rpb2 domain 3; RNA polymerase beta subunit; RNA polymerase Rpb2 domain 2; DNA-directe DNA sequence : ATGGTTTACTCCTATTCTGAAAAGAAGCGTATTCGCAAAGACTTTGGTAAGCGTCCACAGGTGTTGGATATTCCTTACCT TTTGTCTATTCAGTTAGACTCTTTTAAGAAGTTCACCGATCAAGATCCTACCGGTGAGCGCGGTCTTGAAGCCGCCTTCC GTAGCGTTTTTCCCATCAAGAGCTTTTCTGGTAATTCAGAACTGCAATACGTCAGCTATAAGCTTGGCGAGCCTGTTTTT GATGTGAAAGAGTGTCAGATCCGCGGTGTTACGTATTCAGCACCACTACGCGTTAAATTACGCATGGTGTTGTATGACCG TGAAGCAGCGGCAGGCACTGTAAAAGATATTAAAGAGCAAGAAGTCTACATGGGCGATATCCCATTGATGACGGATAACG GTACCTTTGTTATCAACGGTACTGAGCGTGTAATCGTATCTCAATTACACCGTAGCCCTGGCGTGTTCTTCGATCATGAC CGTGGTAAAACCCACTCATCGGGTAAGGTGCTGTATAACGCACGTATTATTCCTTACCGTGGTTCATGGCTTGACTTTGA ATTCGATCCTAAAGATGCACTTTTCGTACGTATTGACCGTCGTCGTAAATTACCAGCGACCATCATTCTGCGTGCATTAG AATACTCTACTCAAGAGATCCTCGACCTGTTCTTCGAACGTGTTGAGTTCAAGATCAAGAAAGATACGTTAGTCATGGCG TTAGTTCCTGAGCGTCTGCGTGGCGAAACTGCCAGCTATGACATCAAGGATGCTGAAGGTTCTGTGCTGGTTGAAGCGGG CCGTCGTATTACTGCGCGCCATATTCGCCAGTTAGAAAAGACTAATACCACTGAACTCGAAGTGCCAGTTGAATATATCG TGGGCAAATATGCTGCTCAAGATTATATCGATCCGGACACGGGTGAAGTTTTAGTGTCTGCAAACAGTGAAATCAGCTTA GAAGACTTAGCGAAATTATCACTGGCTGGCATTAAAGATATCAGCACGTTGTATATCAACGAGCTAGATCATGGTGCTTA TATTTCAGATACGCTGCGTATCGATTCAACCACTAACCGCTTAGAAGCGCTGGTTGAAATCTATCGTATGATGCGTCCTG GCGAGCCACCAACCAAAGATGCGGCAGAAGCACTATTCCAGAACTTGTTCTTCAGTGAAGAACGCTATGACCTGTCTAAA GTCGGTCGTATGAAGTTCAACCGTCGTCTGAGCATCCCCGATGACGAAGGTAGCGGTGTATTGTCTAAAGAAGACATCGT CGCGGTAATGAAGAACATCATTCATATCCGTAACGGTTTCGACGAAGTCGATGACATCGATCACTTAGGTAACCGTCGTA TTCGTAGCGTCGGTGAAATGGCTGAAAACCAATTCCGTGTTGGTTTAGTCCGTGTTGAGCGCGCCGTGCGTGAACGTCTA TCTTTAGGCGATCTGAACGAGCTGATGCCACAAGACTTAATCAACGCTAAGCCAATTTCTGCTGCAGTGAAAGAGTTCTT CGGTTCTTCTCAGCTGTCACAATTCATGGACCAAAACAACCCGCTGTCAGAAGTCACGCATAAGCGTCGTATTTCTGCTC TTGGCCCTGGAGGTTTGACTCGTGAACGTGCAGGCTTCGAAGTCCGTGACGTACATCCAACGCATTATGGCCGTTTATGT CCAATTGAGACCCCTGAAGGTCCAAACATTGGTCTAATCAACTCATTAGCAAGTTTTGCCCGTACTAACTCATACGGCTT CTTAGAAACGCCATACCGCAAGGTGATTGACGGCGTGATTACTGACGAAGTGGAATACTTGTCAGCGATTGAAGAAGGTC GTTATGTCATTGCACAGGCAAACATCGAAGTTGATGCAAATGGCCGCATGGTTGAAGAGCAGATCGCCTGTCGTCATAAA GGTGAATCTACCTTTATGCGCGCATCTGATATTCAATACATGGACGTATCGCCACAACAGATTATTTCTGTTGCTGCATC ACTGATCCCGTTCTTAGAACACGACGACGCTAACCGTGCATTGATGGGTGCGAACATGCAACGTCAAGCCGTACCCACAC TGCGCTCTGAAAAGCCGTTAGTCGGTACTGGTATTGAACGTACGCTAGCTGTTGATTCTGGTGTAGTAGTTGTTGCTAAG CGTGGTGGTTATATCGACTACGTTGATGCGAGCCGTATCGTTGTTAAAGTCAATGAAGATGAGCTACGTCCAGGCGAAGC GGGTATCGACATTTATAACCTGACTAAATACACCCGTTCTAACCAAAATACTTGTATCAACCAGCGCCCTTGTTGTGCCG TTGGTGAGCCAGTAGTTCGTGGTGACGTGTTAGCAGACGGTCCGTCTACTGACTTAGGTGACTTAGCTCTTGGCCAGAAC ATGCGCATCGCGTTCATGCCTTGGAACGGTTACAACTTCGAAGACTCGATCTTAATTTCTGAGCGCGTAGCACAGGAAGA CCGCTTCACCACTATCCACATCCAAGAGCTGTCTTGTATTGCTCGTGATACCAAACTGGGTAGCGAAGAAATCACCGCTG ATATTCCAAACGTAGGTGAATCTGCTCTGTCGAAACTCGACGAATCAGGTATCGTTTATATTGGTGCAGAAGTGAAGGGT GGCGATATTCTGGTCGGTAAAGTGACGCCAAAAGGCGAAACTCAGCTAACACCAGAAGAGAAGTTACTCCGTGCTATCTT CGGTGAGAAAGCGTCTGATGTGAAAGACAGCTCACTGCGTGTACCTAACTCTGTTAAGGGCACTATCATCGACGTTCAGG TATTTACCCGTGACGGCGTTGAAAAAGATAAACGTGCAGTTGAAATCGAAGAGATGCACATCGCTCAAGCACGTAAAGAC TTAAGCGAAGAGTTCAAGATCCTTGAAGAAGGTGTATTGAGCCGTGCTCGTAACCTATTGTTAGGTGCAGGTTTTACAGA AACACAAATCGCAGCGATGCCACGTAAGGATGTATTGGTTCAAGTTATTGACGATGAAGCAAAACAAACTGAACTTGAGC AATTAGCTGAGCAGCATGAAGAGCTGAAAGCAGACTTCGATAAGAAGTTTGAAATTAAACGTCGCAAGATCACCCAAGGT GATGACTTGGCGCCAGGCGTACTGAAGATCGTTAAGGTTTACTTAGCGGTTAAGCGTACTATCCAACCTGGTGACAAGAT GGCGGGTCGTCATGGTAACAAAGGTGTTATCTCTAAGATTTGCCCAATCGAAGACATGCCATATGACGAACAAGGTAACC CAGTAGACATCGTATTGAACCCACTAGGTGTTCCGTCACGGATGAACATTGGTCAGGTACTTGAAGTCCATATGGGCGCC GCCGCTAAAGGTATTGGTAACAAGATCACTGCAATGCTTGAAGAACAGCGCGAGCTGGCTGAAGTACGCGGTTACATCAA GCAAGTGTATGAGTTAGGTGACGAAGTGCAGCAGCGCGTCGATATCGATTCATTCACCGATGATGAAGTGATGCGTCTTG CCCAAAACTTGAAGGGTGGTATCCCGATTGCGACTCCTGCATTCGACGGTGCTAAAGAGAAAGAGATCAAGCAGATGCTT GAGCTTGCAGGCTTGCCAACCTCTGGCCAGCTGAAGTTGTATGATGGTCGTACCGGTAACGAATTTGAGCGTCAAGTAAC CGTTGGTTACATGTACATGCTCAAACTGAACCACTTAGTTGATGACAAGATGCACGCCCGTTCTACCGGTTCGTACAGCT TAGTGACTCAACAACCACTGGGCGGTAAAGCTCAGTTCGGTGGTCAGCGTTTCGGTGAGATGGAAGTGTGGGCACTAGAA GCATACGGTGCCGCTTATACGCTTCAAGAAATGCTCACCGTGAAATCGGATGACGTTAACGGTCGTACTCAGATGTATAA GAACATCGTCGACGGTAACCATCAGATGCAACCTGGCATGCCAGAGTCCTTCAACGTGTTACTGAAGGAGATCCGTTCAC TCGGTATTAATATCGAGTTGGATCAGGAATAA Protein sequence : MVYSYSEKKRIRKDFGKRPQVLDIPYLLSIQLDSFKKFTDQDPTGERGLEAAFRSVFPIKSFSGNSELQYVSYKLGEPVF DVKECQIRGVTYSAPLRVKLRMVLYDREAAAGTVKDIKEQEVYMGDIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDHD RGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDALFVRIDRRRKLPATIILRALEYSTQEILDLFFERVEFKIKKDTLVMA LVPERLRGETASYDIKDAEGSVLVEAGRRITARHIRQLEKTNTTELEVPVEYIVGKYAAQDYIDPDTGEVLVSANSEISL EDLAKLSLAGIKDISTLYINELDHGAYISDTLRIDSTTNRLEALVEIYRMMRPGEPPTKDAAEALFQNLFFSEERYDLSK VGRMKFNRRLSIPDDEGSGVLSKEDIVAVMKNIIHIRNGFDEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVRERL SLGDLNELMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGPGGLTRERAGFEVRDVHPTHYGRLC PIETPEGPNIGLINSLASFARTNSYGFLETPYRKVIDGVITDEVEYLSAIEEGRYVIAQANIEVDANGRMVEEQIACRHK GESTFMRASDIQYMDVSPQQIISVAASLIPFLEHDDANRALMGANMQRQAVPTLRSEKPLVGTGIERTLAVDSGVVVVAK RGGYIDYVDASRIVVKVNEDELRPGEAGIDIYNLTKYTRSNQNTCINQRPCCAVGEPVVRGDVLADGPSTDLGDLALGQN MRIAFMPWNGYNFEDSILISERVAQEDRFTTIHIQELSCIARDTKLGSEEITADIPNVGESALSKLDESGIVYIGAEVKG GDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNSVKGTIIDVQVFTRDGVEKDKRAVEIEEMHIAQARKD LSEEFKILEEGVLSRARNLLLGAGFTETQIAAMPRKDVLVQVIDDEAKQTELEQLAEQHEELKADFDKKFEIKRRKITQG DDLAPGVLKIVKVYLAVKRTIQPGDKMAGRHGNKGVISKICPIEDMPYDEQGNPVDIVLNPLGVPSRMNIGQVLEVHMGA AAKGIGNKITAMLEEQRELAEVRGYIKQVYELGDEVQQRVDIDSFTDDEVMRLAQNLKGGIPIATPAFDGAKEKEIKQML ELAGLPTSGQLKLYDGRTGNEFERQVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALE AYGAAYTLQEMLTVKSDDVNGRTQMYKNIVDGNHQMQPGMPESFNVLLKEIRSLGINIELDQE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 68 |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 68 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Sput200_0158 | YP_006008113.1 | DNA-directed RNA polymerase subunit beta | CP000034.1.gene3741. | Protein | 0.0 | 81 |
| Sput200_0158 | YP_006008113.1 | DNA-directed RNA polymerase subunit beta | CP001918.1.gene250.p | Protein | 0.0 | 81 |
| Sput200_0158 | YP_006008113.1 | DNA-directed RNA polymerase subunit beta | NC_002695.1.914942.p | Protein | 0.0 | 81 |
| Sput200_0158 | YP_006008113.1 | DNA-directed RNA polymerase subunit beta | CP000647.1.gene4402. | Protein | 0.0 | 81 |
| Sput200_0158 | YP_006008113.1 | DNA-directed RNA polymerase subunit beta | CP001138.1.gene4362. | Protein | 0.0 | 80 |
| Sput200_0158 | YP_006008113.1 | DNA-directed RNA polymerase subunit beta | CP004022.1.gene2794. | Protein | 0.0 | 80 |
| Sput200_0158 | YP_006008113.1 | DNA-directed RNA polymerase subunit beta | NC_002516.2.881699.p | Protein | 0.0 | 71 |
| Sput200_0158 | YP_006008113.1 | DNA-directed RNA polymerase subunit beta | CP000675.2.gene392.p | Protein | 0.0 | 70 |
| Sput200_0158 | YP_006008113.1 | DNA-directed RNA polymerase subunit beta | NC_009085.4918494.p0 | Protein | 0.0 | 68 |
| Sput200_0158 | YP_006008113.1 | DNA-directed RNA polymerase subunit beta | NC_010410.6003841.p0 | Protein | 0.0 | 68 |
| Sput200_0158 | YP_006008113.1 | DNA-directed RNA polymerase subunit beta | NC_011586.7046027.p0 | Protein | 0.0 | 68 |
| Sput200_0158 | YP_006008113.1 | DNA-directed RNA polymerase subunit beta | NC_010400.5987325.p0 | Protein | 0.0 | 68 |
| Sput200_0158 | YP_006008113.1 | DNA-directed RNA polymerase subunit beta | NC_010611.6233925.p0 | Protein | 0.0 | 68 |
| Sput200_0158 | YP_006008113.1 | DNA-directed RNA polymerase subunit beta | NC_011595.7060572.p0 | Protein | 0.0 | 68 |
| Sput200_0158 | YP_006008113.1 | DNA-directed RNA polymerase subunit beta | NC_008702.1.4609796. | Protein | 0.0 | 65 |
| Sput200_0158 | YP_006008113.1 | DNA-directed RNA polymerase subunit beta | CP002695.1.gene18.p0 | Protein | 0.0 | 64 |
| Sput200_0158 | YP_006008113.1 | DNA-directed RNA polymerase subunit beta | NC_011035.1.6448762. | Protein | 0.0 | 62 |
| Sput200_0158 | YP_006008113.1 | DNA-directed RNA polymerase subunit beta | AM180355.1.gene120.p | Protein | 0.0 | 48 |
| Sput200_0158 | YP_006008113.1 | DNA-directed RNA polymerase subunit beta | CP001581.1.gene3846. | Protein | 0.0 | 47 |
| Sput200_0158 | YP_006008113.1 | DNA-directed RNA polymerase subunit beta | NC_012469.1.7686402. | Protein | 4e-179 | 46 |
