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Name : RIA_0681 (RIA_0681) Accession : YP_006017180.1 Strain : Riemerella anatipestifer RA-GD Genome accession: NC_017569 Putative virulence/resistance : Unknown Product : DNA-directed RNA polymerase subunit beta/140 kD subunit Function : - COG functional category : - COG ID : - EC number : - Position : 665189 - 669016 bp Length : 3828 bp Strand : - Note : - DNA sequence : ATGAGTAAATCAAAGACGACACAAAAAGCTCAGGGAAATCAAAGAATTAATTTCTCGTCTGCTAAAGGAAGAGTGGAGAC GCCAGACTTTTTGGATATCCAAATTCAATCCTTTAAGGAGTTCTTTCAGCTAGACACACTTCCGGAGCAGAGAGTGAACG AAGGACTTTACAAAACCTTCCAAGAAAATTTCCCAATTACAGATTCTAGAAACCAGTTTGTACTAGAATTTTTAGATTAC TTAGTAGATTCTCCTCGCTACTCTATAGATGAGTGTGTAGAGAGAGGGCTTACTTATTCTGTGCCATTAAAGGCAAGATT AAAACTATATTGTACAGACCCAGAGTACGATGATTTCCAAACGGTAATCCAAGATGTATATCTAGGTACGGTACCTTATA TGACGCCTAGTGGTTCATTTATCATCAATGGTGCAGAGCGTGTGGTAGTAACACAGTTGCATAGATCTCCAGGGGTGTTC TTCGGGCAGACTTACCACGCTAATGGTACTAAATTATACTATTCTAGAATTATCCCATTTAAAGGGTCTTGGATGGAATT TACTACGGATATTAACAGCGTAATGTACGCTTATATAGACCGTAAGAAAAAATTACCATTAACCACTTTACTTAGAGCTA TCGGTTACGAATCTGATAAAGAAATTCTTCAGATATTTGACTTGGCAGAAGAGGTTAAAGTGTCTAAAGCGGCTCTTAAA AAAGTAGAAGGTAGAACTTTAGCAGCTAGAGTTCTTAATACTTGGTTTGAAGATTTCGTAGATGAAGATACAGGTGAGGT AGTTTCTGTAGAAAGAAACGAAATTATCTTAGATAGAGAAACCGTTCTTGAAAAAGAACATTTAGATTTGATTTTGGAGG CTGGTGTTAAAACCATTTTAATCCATAATGAAAACACTAAGGAGTTCTCTATCATTCAAAATACATTACAAAAAGACCCT ACCAACTCAGAGAAAGAAGCGGTAGAGTATATCTATCGTCAGTTGAGAAATGCAGATCCACCTGATGAAGAAACTGCAAG AGGAATTATAGAAAAGCTATTCTTCTCAGAGCAGAGATATTCTTTAGGAGAGGTAGGTCGTTACAGATTGAACAAAAAGC TAGGTCTTAGCGTAGACGAAAGTGTAGAGGTGCTTACTAAAGAGGACATCATTAGTATTGTAAAACACTTAATAGAGTTA GCTAACTCTAAAGCAGAGGTAGATGATATAGACCACCTTTCTAATAGAAGAATTAGAACGGTAGGAGAGCAGTTGGCAGG TCAGTTTGGAGTAGGTCTTTCTAGAATTGCAAGAACAATCCGTGAGAGAATGAATGTTCGTGATAACGAATTGTTTAGCC CAACAGATTTAGTTAACGCTAAAACATTAACATCGGTAATTAACTCGTTCTTTGGAACTAACCAGCTTTCTCAGTTCATG GATCAAACCAATCCACTTTCTGAGATTACACATAAGAGAAGATTATCAGCTTTAGGACCTGGTGGTCTTTCTAGAGAAAG AGCAGGTTTTGAGGTTCGAGATGTTCACCATACACACTACGGAAGAATTTGTCCAATTGAGACGCCGGAAGGACCGAACA TTGGTTTGATTTCTTCTTTAGGTATTTATGCTAAAATCAATAATCTAGGTTTCATAGAAACGCCTTATCGTAAGGTAGAA AATGGTAAAGTAGATTTAGATGCGGCACCTATTTATCTTAATGCAGAAGATGAGGAAGCTAAAATTATTGCTCAAGCGAA TGTGGAGCTTGCTGATGATGGTAAGTTTGAAACAGAGAGAATTATTGCTCGTTTAGATGGAGATTACCCAGTGGTAGAAC CAGAGCAAGTAGATTTAATAGATGTAGCTCCTAACCAGATTTCTGGTATTTCGGCATCACTTATTCCTTTCCTAGAACAC GATGATGCTAACCGTGCCTTGATGGGATCTAACATGATGCGTCAGGCAGTACCATTATTAAAACCTCAAGCACCTATCGT AGGTACAGGTCTAGAGAAGCAAGTGGCTAGAGACTCTAGAATTTTAATCAATGCTGAAGGAACTGGTGTTGTAGAGTATG TAGATGCGGAGAGAATCGTTATAAAATACGATAGAACTGAAGATGAAGATATTGTAAGCTTCGAATCAGCTACTAAAACT TATCATTTAACTAAGTTCAGAAAAACCAACCAATCTACTACCATTACTCTTAAACCTATTGTAAGGGTAGGAGATACAGT AGAAAAAGGACAAGTGCTTTGTGATGGTTACGCTACAGAAAACGGAGAGTTAGCATTAGGTAGAAACTTAGTGGTAGCGT TTATGCCTTGGAAAGGGTATAACTTCGAGGATGCAATTGTAATCAACGAAAAAGTAGTTCGTGAGGACTGGTTTACCTCT ATCCACGTAGATGAATATTCATTAGAGGTAAGAGATACCAAACTAGGTATGGAGGAGCTTACAGCAGATATTCCTAATAT ATCTGAAGATGCTACAAAAGACCTAGATGAAAACGGTATGATAAGAATCGGAGCAGAGGTAAAACCTGGTGATATTCTTA TTGGTAAAATCACGCCTAAAGGAGAGTCTGATCCTACTCCAGAAGAGAAGTTATTAAGAGCTATCTTCGGAGATAAAGCA GGAGATGTAAAAGACGCTTCTTTAAAGGCAGATTCTTCATTAAGAGGGGTAGTGATAGACAAAAAGCTATTCTCTAGAAA CATTAAGGATAAGAAGAAGAGAACAGAAGAGAAAATCAAACTAGAAGAAATAGAAAACCAATATAAAGCCAAGTTCAACG AGCTTAGAACGGTTCTTTTAGATAAATTAAACACTATTGTTAATGGTAAAACATCTCAAGGAGTTAAAAACGACTTAGGA GAAGAAATCATTGGTAAAGGTGCTAAGTTCTCTATGAAATTACTTCAGTCAGTAGAAGATTATGTAAATGTAAGCGGTTC TGACTGGACAGTAGATGCGGATAAAAACGAGTTAATTAAGCAATTAATTCACAACTATAAGATTAAGTACAACGATTTAC AAGGAGTTAAAAACCGTGAGAAGTACGCTATTTCAATCGGAGACGAGCTTCCTTCAGGAATCATTAAGTTGGCCAAAGTT TACATCGCTAAGAAGAGAAAGTTAAATGTAGGAGATAAGATGGCAGGGCGTCACGGTAACAAAGGTATCGTATCTAGAAT CGTTCGTGAGGAAGATATGCCTTTCTTAGAAGACGGTACGCCAGTTGACATCGTACTTAACCCGCTAGGGGTACCTTCTC GTATGAACATCGGTCAGATTTACGAAACGGTACTTGGTTGGGCAGGTAAGCAATTAGGCTTGAAGTTCGCAACGCCTATC TTTGATGGTGCTAAACTAGACCAAATTACAGAGTACACCGAAAAAGCAGGGCTACCTATCTACGGAAACACTTATCTGTA TGACGGCGGTACAGGGGAGAGATTTACTCAACCAGCTACTGTAGGTGTGATTTATATGTTGAAACTTGGTCACATGGTAG ATGATAAGATGCATGCTCGTTCTATTGGTCCTTACTCTCTCATCACGCAGCAGCCATTAGGAGGTAAAGCCCAATTTGGT GGTCAGCGTTTCGGAGAGATGGAGGTTTGGGCACTAGAAGCATTCGGTGCGTCTAACATCTTGAGAGAAATCCTAACAGT GAAGTCAGATGATGTGATTGGTAGAGCTAAAACTTACGAAGCTATTGCGAAAGGAGAGGCAATGCCAGAACCTGGTATTC CAGAATCTTTCAATGTATTGCTTCACGAGTTACAAGGTTTAGGATTAGATGTAAGGTTAGAGGAATAA Protein sequence : MSKSKTTQKAQGNQRINFSSAKGRVETPDFLDIQIQSFKEFFQLDTLPEQRVNEGLYKTFQENFPITDSRNQFVLEFLDY LVDSPRYSIDECVERGLTYSVPLKARLKLYCTDPEYDDFQTVIQDVYLGTVPYMTPSGSFIINGAERVVVTQLHRSPGVF FGQTYHANGTKLYYSRIIPFKGSWMEFTTDINSVMYAYIDRKKKLPLTTLLRAIGYESDKEILQIFDLAEEVKVSKAALK KVEGRTLAARVLNTWFEDFVDEDTGEVVSVERNEIILDRETVLEKEHLDLILEAGVKTILIHNENTKEFSIIQNTLQKDP TNSEKEAVEYIYRQLRNADPPDEETARGIIEKLFFSEQRYSLGEVGRYRLNKKLGLSVDESVEVLTKEDIISIVKHLIEL ANSKAEVDDIDHLSNRRIRTVGEQLAGQFGVGLSRIARTIRERMNVRDNELFSPTDLVNAKTLTSVINSFFGTNQLSQFM DQTNPLSEITHKRRLSALGPGGLSRERAGFEVRDVHHTHYGRICPIETPEGPNIGLISSLGIYAKINNLGFIETPYRKVE NGKVDLDAAPIYLNAEDEEAKIIAQANVELADDGKFETERIIARLDGDYPVVEPEQVDLIDVAPNQISGISASLIPFLEH DDANRALMGSNMMRQAVPLLKPQAPIVGTGLEKQVARDSRILINAEGTGVVEYVDAERIVIKYDRTEDEDIVSFESATKT YHLTKFRKTNQSTTITLKPIVRVGDTVEKGQVLCDGYATENGELALGRNLVVAFMPWKGYNFEDAIVINEKVVREDWFTS IHVDEYSLEVRDTKLGMEELTADIPNISEDATKDLDENGMIRIGAEVKPGDILIGKITPKGESDPTPEEKLLRAIFGDKA GDVKDASLKADSSLRGVVIDKKLFSRNIKDKKKRTEEKIKLEEIENQYKAKFNELRTVLLDKLNTIVNGKTSQGVKNDLG EEIIGKGAKFSMKLLQSVEDYVNVSGSDWTVDADKNELIKQLIHNYKIKYNDLQGVKNREKYAISIGDELPSGIIKLAKV YIAKKRKLNVGDKMAGRHGNKGIVSRIVREEDMPFLEDGTPVDIVLNPLGVPSRMNIGQIYETVLGWAGKQLGLKFATPI FDGAKLDQITEYTEKAGLPIYGNTYLYDGGTGERFTQPATVGVIYMLKLGHMVDDKMHARSIGPYSLITQQPLGGKAQFG GQRFGEMEVWALEAFGASNILREILTVKSDDVIGRAKTYEAIAKGEAMPEPGIPESFNVLLHELQGLGLDVRLEE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 44 |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 44 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| RIA_0681 | YP_006017180.1 | DNA-directed RNA polymerase subunit beta/140 kD subunit | NC_008702.1.4609796. | Protein | 0.0 | 45 |
| RIA_0681 | YP_006017180.1 | DNA-directed RNA polymerase subunit beta/140 kD subunit | NC_002516.2.881699.p | Protein | 0.0 | 45 |
| RIA_0681 | YP_006017180.1 | DNA-directed RNA polymerase subunit beta/140 kD subunit | NC_009085.4918494.p0 | Protein | 0.0 | 45 |
| RIA_0681 | YP_006017180.1 | DNA-directed RNA polymerase subunit beta/140 kD subunit | CP000675.2.gene392.p | Protein | 0.0 | 45 |
| RIA_0681 | YP_006017180.1 | DNA-directed RNA polymerase subunit beta/140 kD subunit | CP002695.1.gene18.p0 | Protein | 0.0 | 45 |
| RIA_0681 | YP_006017180.1 | DNA-directed RNA polymerase subunit beta/140 kD subunit | CP001918.1.gene250.p | Protein | 0.0 | 44 |
| RIA_0681 | YP_006017180.1 | DNA-directed RNA polymerase subunit beta/140 kD subunit | CP001138.1.gene4362. | Protein | 0.0 | 44 |
| RIA_0681 | YP_006017180.1 | DNA-directed RNA polymerase subunit beta/140 kD subunit | CP004022.1.gene2794. | Protein | 0.0 | 44 |
| RIA_0681 | YP_006017180.1 | DNA-directed RNA polymerase subunit beta/140 kD subunit | NC_002695.1.914942.p | Protein | 0.0 | 44 |
| RIA_0681 | YP_006017180.1 | DNA-directed RNA polymerase subunit beta/140 kD subunit | CP000034.1.gene3741. | Protein | 0.0 | 44 |
| RIA_0681 | YP_006017180.1 | DNA-directed RNA polymerase subunit beta/140 kD subunit | CP000647.1.gene4402. | Protein | 0.0 | 44 |
| RIA_0681 | YP_006017180.1 | DNA-directed RNA polymerase subunit beta/140 kD subunit | NC_010410.6003841.p0 | Protein | 0.0 | 44 |
| RIA_0681 | YP_006017180.1 | DNA-directed RNA polymerase subunit beta/140 kD subunit | NC_011586.7046027.p0 | Protein | 0.0 | 44 |
| RIA_0681 | YP_006017180.1 | DNA-directed RNA polymerase subunit beta/140 kD subunit | NC_010400.5987325.p0 | Protein | 0.0 | 44 |
| RIA_0681 | YP_006017180.1 | DNA-directed RNA polymerase subunit beta/140 kD subunit | NC_010611.6233925.p0 | Protein | 0.0 | 44 |
| RIA_0681 | YP_006017180.1 | DNA-directed RNA polymerase subunit beta/140 kD subunit | NC_011595.7060572.p0 | Protein | 0.0 | 44 |
| RIA_0681 | YP_006017180.1 | DNA-directed RNA polymerase subunit beta/140 kD subunit | NC_011035.1.6448762. | Protein | 0.0 | 44 |
