Gene Information

Name : gspC (EC042_3252)
Accession : YP_006097545.1
Strain : Escherichia coli 042
Genome accession: NC_017626
Putative virulence/resistance : Virulence
Product : type II secretion system protein C
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3469139 - 3470098 bp
Length : 960 bp
Strand : -
Note : -

DNA sequence : 
TTGGCGCGGGTTGTTTTTCGTGACGCACGAATTTATCTCATTCAATGGCTGACAAAAATTCGTCACACTCTTAACCAGAG
ACAATCTCTTAATACAGACAAAGAGCATCTGCGAAAAATTGTACGCGCGATGTTCTGGCTGATGCTGCTTATTATTTCTG
CAAAAGTGGCGCATTCACTCTGGCGCTATTTCTCCTTTTCTGCGGAATATACGGCGGTTTCCCCATCGGCGAATAAACCG
CCCCGTGCAGATGCAAAAACGTTCGATAAAAATGACGTGCAATTAATCAGCCAGCAAAACTGGTTTGGCAAATATCAGCC
CGTCGCCGCACCGGTAAAACAACCTGAACCTGTGCCTGTGGCAGAAACACGTCTTAATGTGGTGCTGCGCGGGATCGCCT
TTGGTGCCAGACCTGGCGCGGTTATTGAAGAAGGTGGCAAACAGCAGGTCTATTTGCAGGGGGAACGGCTTGGTTCTCAC
AACGCGGTGATTGAGGAAATCAACCGCGACCATGTGATGCTGCGCTATCAGGGAAAAATAGAGCGCCTGAGCCTGGCTGA
AGAGGAGCGTTCCACCGTTGCCGTGACCAACAAAAAAGCTGTCAGTGACGAAGCAAAGCAAGCTGTTGCTGAACCTGCTG
TCAGTGCGCCAGTTGAGATCCCGACTGCCGTGCGTCAGGCACTGGCGAAAGATCCGCAGAAAATTTTTAACTATATCCAG
CTTACGCCTGTGCGTAAGGAGGGGATTGTCGGTTATGCAGTGAAGCCGGGGGCAGATCGTTCTCTGTTCGATGTCAGCGG
TTTCAGGGAAGGCGATATCGCCATTGCGCTAAATCAGCAGGATTTCACTGATCCACGAGCAATGATTGCTCTGATGCGGC
AGTTACCTTCAATGGATTCCATTCAACTTACGGTTTTACGCAAGGGTGCGCGCCACGACATTTCCATCGCGCTGCGCTAA

Protein sequence : 
MARVVFRDARIYLIQWLTKIRHTLNQRQSLNTDKEHLRKIVRAMFWLMLLIISAKVAHSLWRYFSFSAEYTAVSPSANKP
PRADAKTFDKNDVQLISQQNWFGKYQPVAAPVKQPEPVPVAETRLNVVLRGIAFGARPGAVIEEGGKQQVYLQGERLGSH
NAVIEEINRDHVMLRYQGKIERLSLAEEERSTVAVTNKKAVSDEAKQAVAEPAVSAPVEIPTAVRQALAKDPQKIFNYIQ
LTPVRKEGIVGYAVKPGADRSLFDVSGFREGDIAIALNQQDFTDPRAMIALMRQLPSMDSIQLTVLRKGARHDISIALR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
gspC CAE85235.1 GspC, hypothetical type II secretion protein Not tested PAI V 536 Protein 6e-118 97

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
gspC YP_006097545.1 type II secretion system protein C VFG2046 Protein 7e-118 95