Gene Information

Name : ECOK1_1106 (ECOK1_1106)
Accession : YP_006100314.1
Strain : Escherichia coli IHE3034
Genome accession: NC_017628
Putative virulence/resistance : Virulence
Product : MarR family transcriptional regulator
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1150294 - 1150794 bp
Length : 501 bp
Strand : +
Note : identified by match to protein family HMM PF01047

DNA sequence :
ATGAATAACACAGACACATTAGAAAAAATAATCAGACACCAAAAAAACAAAGACCCGGTATATCCCTTTCGGGAACATTT
GTTGATGCAACTTTGTATTCGCGCAAATAAAAGGATGCAGGATAATATATCTGAATTTCTGGGGGCGTATGGAATAAATC
ACTCAGTGTACATGGTTCTCACCACATTATTCACAGCGGAGAGTCATTGTCTGTCACCTTCAGAGATAAGCCAGAAACTG
CAGTTTACCAGAACTAATATTACCCGCATTACAGATTTTTTAGAAAAAACCGGATATGTAAAAAGGACGGATAGCAGGGA
GGATCGCCGTGCTAAAAAAATCAGTCTGACATCTGAAGGTATGTTTTTTATTCAGAGGCTCACTCTTGCACAAAGCATGT
ATCTGAAAGAAATCTGGGGTTATCTGACCCATGATGAACAGGAACTGTTTGAAGTCATTAATAAAAAATTACTGGCGCAT
CTTGATGATGTCAGCTCATAA

Protein sequence :
MNNTDTLEKIIRHQKNKDPVYPFREHLLMQLCIRANKRMQDNISEFLGAYGINHSVYMVLTTLFTAESHCLSPSEISQKL
QFTRTNITRITDFLEKTGYVKRTDSREDRRAKKISLTSEGMFFIQRLTLAQSMYLKEIWGYLTHDEQELFEVINKKLLAH
LDDVSS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
fooX AAT48696.1 putative regulatory protein Not tested PAI I 4787 Protein 1e-74 99
sfaX CAC43423.1 SfaX protein Virulence PAI III 536 Protein 7e-75 99
fotX AAT48705.1 FotX protein Not tested PAI II 4787 Protein 4e-75 99
prfX CAD42022.1 PrfX protein Virulence PAI II 536 Protein 5e-74 97
ECUMN_3330 YP_002414008.1 putative HTH-type transcriptional regulator Not tested Not named Protein 2e-72 97
papX NP_755457.1 PapX protein Virulence PAI I CFT073 Protein 2e-72 97
prsX CAD33722.1 PrsX protein Not tested PAI I 536 Protein 8e-74 96
unnamed CAD66213.1 putative MarR-family transcriptional regulator Not tested PAI III 536 Protein 3e-32 46
APECO1_1713 YP_851471.1 hypothetical protein Not tested PAI III APEC-O1 Protein 5e-32 46

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ECOK1_1106 YP_006100314.1 MarR family transcriptional regulator VFG1649 Protein 3e-75 99
ECOK1_1106 YP_006100314.1 MarR family transcriptional regulator VFG1541 Protein 2e-74 97
ECOK1_1106 YP_006100314.1 MarR family transcriptional regulator VFG1713 Protein 5e-73 97
ECOK1_1106 YP_006100314.1 MarR family transcriptional regulator VFG1463 Protein 3e-74 96
ECOK1_1106 YP_006100314.1 MarR family transcriptional regulator VFG1688 Protein 1e-32 46