Gene Information

Name : HCN_1426 (HCN_1426)
Accession : YP_006235739.1
Strain : Helicobacter cinaedi PAGU611
Genome accession: NC_017761
Putative virulence/resistance : Virulence
Product : type VI secretion protein VC_A0107 family
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1421249 - 1421734 bp
Length : 486 bp
Strand : -
Note : -

DNA sequence : 
ATGTCTGATGGTTCTAGTGCTCCAAAAGAGCGTATTAATATCACATACAAAGCAAAAACGAATGGACAAGAAGCAGATGT
TGAGTTACCCTTAAAATTGATGGTAATGACAAATTTGACAGGAGGAGCTGATAAATTACCTTTGGAAGAGCGAGAGATTT
TACAAATTAATAAGGTAAATTTTAGTCAGGTAATGCAGAAATTGGATATTAGTTCTAAATTTAGTGTTAAGAACACCTTG
GGCACAGGAGCAGAAGAGCTAAGTATTAATCTTAAAATTTCTAGTATGAAAGACTTTTCCCCAGATAGTATAGCAAAGCA
AATTCCCGAGCTTAATAAACTTATGCAACTAAGAGAGGCTTTAGTGGCTTTAAAAGGACCTATGGGTAATATTCCAGATT
TTAGAAAAGCAGTTTTAACCGCTTTAAAAGATAAAAAAACAAAAGAGAAATTGCTTTTAGAAATTAAAGAAGAAGTCAAA
GAATAG

Protein sequence : 
MSDGSSAPKERINITYKAKTNGQEADVELPLKLMVMTNLTGGADKLPLEEREILQINKVNFSQVMQKLDISSKFSVKNTL
GTGAEELSINLKISSMKDFSPDSIAKQIPELNKLMQLREALVALKGPMGNIPDFRKAVLTALKDKKTKEKLLLEIKEEVK
E

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
HH0248 NP_859779.1 hypothetical protein Not tested HHGI1 Protein 4e-44 70
aec17 YP_851427.1 hypothetical protein Not tested PAI II APEC-O1 Protein 5e-30 50
aec17 AAQ96711.1 Aec17 Not tested AGI-1 Protein 3e-30 50

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HCN_1426 YP_006235739.1 type VI secretion protein VC_A0107 family VFG2092 Protein 4e-31 51
HCN_1426 YP_006235739.1 type VI secretion protein VC_A0107 family VFG2474 Protein 1e-27 46