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Name : Q7C_2390 (Q7C_2390) Accession : YP_006294207.1 Strain : Methylophaga sp. JAM7 Genome accession: NC_017856 Putative virulence/resistance : Unknown Product : DNA-directed RNA polymerase subunit beta Function : - COG functional category : - COG ID : - EC number : 2.7.7.6 Position : 2387401 - 2391477 bp Length : 4077 bp Strand : + Note : PFAM: RNA polymerase Rpb2, domain 3; RNA polymerase Rpb2, domain 6; RNA polymerase beta subunit external 1 domain; RNA polymerase Rpb2, domain 2; RNA polymerase beta subunit; RNA polymerase Rpb2, domain 7; TIGRFAM: DNA-directed RNA polymerase, beta subuni DNA sequence : ATGGCTTATACGTTTACCGAGAAAAAACGGATTCGTAAAGATTTTGGCAAGCGCTCTAGTGTTCTGACCGTCCCGAACCT GCTGGCAACGCAAGTCAATTCCTATCAGGATTTTCTGCAAATGGGTGTTGCAGCTGACGAGCGGGGCAGCGTGGGATTGC ACGCCGCGTTTGAGTCAGTGTTCCCGATTAAAAGCCATACCGGTATGGCTGAACTCCAGTATGTGAGCTATCGGCTTGGC GTGCCTACTTTTGACGTGAAAGAATGTCAATTACGGGGCGTCACCTATGCCGCACCTTTAAGAGTTAAAATGCGTCTGGT TATTTATGACAAAGACGCCCCTGCTAAACAAAAAGTCGTCAAAGACATTAAAGAGCAGGAAGTTTACATGGGTGAAATCC CGTTAATGACGGAGAAAGGTAACTTCGTTATCAATGGGACTGAGCGCGTTATTGTGTCGCAATTGCATCGCTCCCCAGGG GTTTTCTTTGATAGTGATAAAGGAAAAACCCATTCATCAGGCAAAATTTTATATAACGCACGGGTCATCCCTTATCGCGG TTCTTGGTTGGACTTCGAGTTTGATCCGAAAGATGCTGTCTTTGTACGTATTGACCGTCGCCGTAAGTTACCTGCAACCA TCCTGCTCCGTGCCTTGGGTTACGGCAACCAGGAAATCCTAGAAATCTTCTTTGATAACGACGTGTTTACCCGTCGTAAA GCAGGCTTTGAACTGGCGCTGGAACCACAGCGGCTGCGCGGCCAATCTGTGCCTTTTGATATTCTGAATAAAGAAGGCGA GGTCATCGTTGAAGCTGAGCGGCAAATAACGGGCCGCCACATTCGGCAGTTGGAAAAAGCCAATATGTCTGCGCTGTCTG TGCCGGAAGCGTATCTGGTTGGTAAAGTGATTGCGAAAGATGTCATCGATACCGATACAGGTGAGTTATTGGCAAATGCC AATGATGAAATCACCAGCGACATTCTGGAAAAATTCGAACGCTTTGGTGTTGATAGTATTGAAACTATTTATGCGAATGA TTTGGACCATGGTCCTTATATTTCTGACACCCTGCGTCTTGACGAAACCCGCACTGACCTGGAAGCAAAAGTCGAAATTT ACCGGATGATGCGTCCCGGTGAGCCGCCAACAGAAGACGCGGCGGAAAACCTGTTCCAGAATTTATTCTTCACTCATGAT CGCTATGATTTGTCCAATGTCGGTCGGATGAAATTTAACCGCCGATTGGGTCGTGAAGAACTGGAAGGCGAAGGCACACT TTCTAAAGAAGACATCCTCGCGGTAATCAGTGAACTTATCTCGATTCGCAATGGTTTTGGCGTTGTCGATGATATTGATC ATTTGGGTAATCGACGTGTTCGTAGCGTTGGTGAAATGGCTGAAAATCAATTCCGCGTTGGTCTGGTTCGGGTTGAACGT GCCGTGCGTGAACGGTTAAGCATTGCTGAATCAGAAGGCCTGATGCCACAGCAGTTGATTAATGCCAAACCGGTTGGCGC AGCGATTAAAGAGTTCTTTGGCTCAAGTCAGCTGTCGCAGTTTATGGATCAAAATAACCCCTTATCGGAAGTCACCCATA AACGTCGTGTTTCTGCATTAGGCCCGGGCGGTCTGACTCGTGAACGTGCTGGTTTTGAGGTTCGTGACGTACATCCCACG CACTATGGCCGAGTCTGCCCAATCGAGACACCGGAAGGTCCGAATATCGGCCTGATTAACTCGTTGGCTTGTTATGCACG TACCAATAAATACGGCTTCATCGAAACACCGTACCGGAAGGTTATTGATGGTAAGGCAACGGATGAAATCATCTATTTGT CGGCGATTGATGAAGGCGAATACAAAATTGCACAGGCGACGATTGCGTTAAATAGCGATAACTCAATTGCTGATAATTTG GTGCCTTGTCGTTATCGGAATGAGTTTTCATTGACGCCATCTGAACAAGTTCAGTTGATGGACGTGTCGCCTCGTCAGGT TGTCTCTGTCGCGGCATCATTGATCCCATTCCTTGAGCATGATGATGCGAACCGGGCCTTGATGGGCTCGAACATGCAAC GTCAGGCTGTTCCGACACTCCGTGCTGACAAACCGTTAGTTGGTACCGGAATGGAACGGGTTGTGGCTCAGGATTCTGGT GTCATGGTCACGGCGAAACGGGGTGGTGTGGTTGACTCCGTGGATGCGAGCCGGGTGGTTATTCGTGTTAATGATGACGA AACCGAAGGCAATGAATCCGGCGTTGATATTTACAACCTGATCAAATACGCACGCTCAAATCAAAGCACCTGTATTAACC AACGGCCTATTGTCAAACCGGGCGATATTATTGGTAAAGGCGATACCCTTGCTGATGGTCCGTCGACCGATAAAGGTGAA TTGGCATTGGGTCAGAATATTCTGGTCGCTTTCATGCCGTGGAATGGTTATAACTTCGAAGATTCCATTCTTGTCTCTGA ACGTGTCGTAGAAGAAGATCGTTTCACTACGATTCATATTCAGGAATTGAATTGCCTTGCTCGGGAAACAAAACTGGGCA CAGAAGAAATTACCAGTGATATTCCAAACGTCAGTGAGAGTGCACTGGCCAAATTGGATGAATCCGGTATTGTTTATGTC GGTGCCGAAGTCAAACCGGGCGATATTCTGGTGGGCAAGGTGACGCCAAAAGGCGAAACGCAGTTGACACCAGAAGAAAA ACTGCTGAGAGCGATCTTTGGTGAAAAAGCAGCGGATGTGAAAGATTCTTCACTTCGAGTCCCTTCTGGTACTTATGGCA CCGTCGTTGATGTTCAGGTATTCACCCGGGATGGCGTGGATAAAGATGAACGGACAGATCAAATCGAAAAAGCGGAACTT GAGAAAGTCTGGGCGGATCTGAAAGATCAACATCGCATCATGGTTGATGATGTGTTTTCACGACTGGAACGTAATTTAAC CAACAAAGTTGCTAAAAAAGGCCCAGGCATTAAAAAAGGTGACAAACTGACCAAGTCCGTGCTCAAAGGGCTTGAGCAGT CACAGTGGTTCGACTTGCAAATGGAGTCGGATGATCTGAATGCCATGTTGGAATCGGCAAGTAAGCAAATCCAGCAATAC CGAAATGATATGGATGAAGCCTTCCAAATCAAAAAGGACAAACTGACCTCAGGTCATGATTTGGCACCTGGCGTACAGCG CATGGTCAAAGTGTTCTTGGCGGTGAAACGTCGTATCCAGCCAGGCGACAAAATGGCAGGCCGCCATGGTAATAAAGGGG TTATCTCTAACATCGTTCCGGTCGAGGATATGCCTTATACTGAAGATGGCCGTCCGGTTGATATCGTTTTGAATCCATTA GGCGTTCCATCACGGATGAATATCGGTCAGATTCTCGAAGTGCATTTAGGTTGGGCTGCCAAAGGCGTTGGTTACAAGAT TCAGGAGATGTTGGAACAACAACGTGAAGTTGCAGAGCTACGTGAGTTCTTAGGTCGTGTCTATAACACCAGTGGCAAGA AAGAAGAGCTGGATGAATTGACGGATGCAGAAATTGTCGAATTAGCAGGTAATCTGCAAGGTGGTGTGCCGATGGCAACC CCAGTATTTGATGGTGCAAACGAAGATGAAATCAAAGATATGCTGGAACTCGCTGGTTTACCTAGAAGTGGCCAAGCGAA ATTAATTGATGGTCGTACCGGAGAGTTTTTCCATCGGCCAGTGACCATTGGTTACATGCATATGCTGAAACTGAATCACT TGGTAGATGACAAGATGCATGCGCGTTCAACCGGTCCATACAGCCTCGTTACCCAACAACCATTGGGTGGTAAAGCCCAG TTTGGTGGTCAGCGCTTTGGTGAGATGGAGGTTTGGGCATTACAGGCTTATGGTGCTGCCTATACCTTGCAGGAAATGTT GACCGTTAAATCGGATGACGTGAATGGCCGTACCAAGATCTACAAAAACATCGTTGATGGTGATTATCGGATGGATGCCG GCATGCCGGAATCCTTCAAGGTACTGACGCGCGAAATTCGCTCACTTGGTATCGATGTCGACCTGGTCGAAGAATAA Protein sequence : MAYTFTEKKRIRKDFGKRSSVLTVPNLLATQVNSYQDFLQMGVAADERGSVGLHAAFESVFPIKSHTGMAELQYVSYRLG VPTFDVKECQLRGVTYAAPLRVKMRLVIYDKDAPAKQKVVKDIKEQEVYMGEIPLMTEKGNFVINGTERVIVSQLHRSPG VFFDSDKGKTHSSGKILYNARVIPYRGSWLDFEFDPKDAVFVRIDRRRKLPATILLRALGYGNQEILEIFFDNDVFTRRK AGFELALEPQRLRGQSVPFDILNKEGEVIVEAERQITGRHIRQLEKANMSALSVPEAYLVGKVIAKDVIDTDTGELLANA NDEITSDILEKFERFGVDSIETIYANDLDHGPYISDTLRLDETRTDLEAKVEIYRMMRPGEPPTEDAAENLFQNLFFTHD RYDLSNVGRMKFNRRLGREELEGEGTLSKEDILAVISELISIRNGFGVVDDIDHLGNRRVRSVGEMAENQFRVGLVRVER AVRERLSIAESEGLMPQQLINAKPVGAAIKEFFGSSQLSQFMDQNNPLSEVTHKRRVSALGPGGLTRERAGFEVRDVHPT HYGRVCPIETPEGPNIGLINSLACYARTNKYGFIETPYRKVIDGKATDEIIYLSAIDEGEYKIAQATIALNSDNSIADNL VPCRYRNEFSLTPSEQVQLMDVSPRQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGMERVVAQDSG VMVTAKRGGVVDSVDASRVVIRVNDDETEGNESGVDIYNLIKYARSNQSTCINQRPIVKPGDIIGKGDTLADGPSTDKGE LALGQNILVAFMPWNGYNFEDSILVSERVVEEDRFTTIHIQELNCLARETKLGTEEITSDIPNVSESALAKLDESGIVYV GAEVKPGDILVGKVTPKGETQLTPEEKLLRAIFGEKAADVKDSSLRVPSGTYGTVVDVQVFTRDGVDKDERTDQIEKAEL EKVWADLKDQHRIMVDDVFSRLERNLTNKVAKKGPGIKKGDKLTKSVLKGLEQSQWFDLQMESDDLNAMLESASKQIQQY RNDMDEAFQIKKDKLTSGHDLAPGVQRMVKVFLAVKRRIQPGDKMAGRHGNKGVISNIVPVEDMPYTEDGRPVDIVLNPL GVPSRMNIGQILEVHLGWAAKGVGYKIQEMLEQQREVAELREFLGRVYNTSGKKEELDELTDAEIVELAGNLQGGVPMAT PVFDGANEDEIKDMLELAGLPRSGQAKLIDGRTGEFFHRPVTIGYMHMLKLNHLVDDKMHARSTGPYSLVTQQPLGGKAQ FGGQRFGEMEVWALQAYGAAYTLQEMLTVKSDDVNGRTKIYKNIVDGDYRMDAGMPESFKVLTREIRSLGIDVDLVEE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 68 |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 68 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Q7C_2390 | YP_006294207.1 | DNA-directed RNA polymerase subunit beta | NC_002516.2.881699.p | Protein | 0.0 | 73 |
| Q7C_2390 | YP_006294207.1 | DNA-directed RNA polymerase subunit beta | NC_002695.1.914942.p | Protein | 0.0 | 70 |
| Q7C_2390 | YP_006294207.1 | DNA-directed RNA polymerase subunit beta | CP000034.1.gene3741. | Protein | 0.0 | 70 |
| Q7C_2390 | YP_006294207.1 | DNA-directed RNA polymerase subunit beta | CP000647.1.gene4402. | Protein | 0.0 | 70 |
| Q7C_2390 | YP_006294207.1 | DNA-directed RNA polymerase subunit beta | CP000675.2.gene392.p | Protein | 0.0 | 70 |
| Q7C_2390 | YP_006294207.1 | DNA-directed RNA polymerase subunit beta | CP001918.1.gene250.p | Protein | 0.0 | 69 |
| Q7C_2390 | YP_006294207.1 | DNA-directed RNA polymerase subunit beta | CP001138.1.gene4362. | Protein | 0.0 | 69 |
| Q7C_2390 | YP_006294207.1 | DNA-directed RNA polymerase subunit beta | CP004022.1.gene2794. | Protein | 0.0 | 69 |
| Q7C_2390 | YP_006294207.1 | DNA-directed RNA polymerase subunit beta | NC_009085.4918494.p0 | Protein | 0.0 | 68 |
| Q7C_2390 | YP_006294207.1 | DNA-directed RNA polymerase subunit beta | NC_010400.5987325.p0 | Protein | 0.0 | 68 |
| Q7C_2390 | YP_006294207.1 | DNA-directed RNA polymerase subunit beta | NC_010410.6003841.p0 | Protein | 0.0 | 68 |
| Q7C_2390 | YP_006294207.1 | DNA-directed RNA polymerase subunit beta | NC_011586.7046027.p0 | Protein | 0.0 | 68 |
| Q7C_2390 | YP_006294207.1 | DNA-directed RNA polymerase subunit beta | NC_010611.6233925.p0 | Protein | 0.0 | 68 |
| Q7C_2390 | YP_006294207.1 | DNA-directed RNA polymerase subunit beta | NC_011595.7060572.p0 | Protein | 0.0 | 68 |
| Q7C_2390 | YP_006294207.1 | DNA-directed RNA polymerase subunit beta | NC_008702.1.4609796. | Protein | 0.0 | 67 |
| Q7C_2390 | YP_006294207.1 | DNA-directed RNA polymerase subunit beta | NC_011035.1.6448762. | Protein | 0.0 | 66 |
| Q7C_2390 | YP_006294207.1 | DNA-directed RNA polymerase subunit beta | CP002695.1.gene18.p0 | Protein | 0.0 | 66 |
| Q7C_2390 | YP_006294207.1 | DNA-directed RNA polymerase subunit beta | CP003583.1.gene2745. | Protein | 0.0 | 47 |
