Gene Information

Name : Q7A_1844 (Q7A_1844)
Accession : YP_006296307.1
Strain : Methylophaga sp. JAM1
Genome accession: NC_017857
Putative virulence/resistance : Virulence
Product : RTX toxin transporter
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1857287 - 1859488 bp
Length : 2202 bp
Strand : +
Note : PFAM: ABC transporter; Peptidase C39 family; ABC transporter transmembrane region; TIGRFAM: type I secretion system ABC transporter, HlyB family

DNA sequence :
ATGGATACTGGACTCAATACTCTAGTCGCAATAGCGCGATTCCATCGGCTCCCCGCCGAAGCTGAGCAGCTATCTCATGA
GTATGGTGTTCCCGGTGAAGTCTTTACTGATACGCAAATTCTGCAAGCATCCAAAGCACTTACGCTAAAAGCCAAAATTC
TCTCCCCAAAATTCGCTCAAATTACTAACGGCATGTTGCCGGCGATTGCCAAAGCAAAAGATGGCAGTTATTTCATTCTG
GCGCGTATTTCAAATGCAATAAAAGAAGGTGATTCCGCTCGTCCGGGCGTATTGATCCACGATTTACGTGAAAAAGCTCC
AGAGAGTCTAGATCAGGAAGCTTTTGAACTGCGCTGGAGTGGTGAAATCATTGCCATTACCAGACGCCAAGGTCTCGGTG
AAAGTCTTCAACAAAAATTTGATATCTCCTGGTTTATTCCTTCACTTGTAAAATATCGAAAGCTTTTCGGTGAAGTGCTA
TTGGCTTCATTTTTCCTGCAACTATTTGCCTTAATGACGCCACTGTTTTTTCAGGTCGTTATGGATAAGGTTTTAGTGCA
TCGTGGTTTCACCACACTGGATGTGCTCGCTGTCGGTTTCTTTGTTGTCGTGGTGTTTGAAGCTCTGCTGGGCGGAATAC
GAAACTACGTGTTATCGCATACAACCAATCGGGTTGATGTTGAACTGGGCTCACGGTTATTTACACATCTTATGGCCTTG
CCTATGGCCTATTTTGAATCCAGACAAGTAGGGCAAAATGTAGCCAGGGTCAGAGAGCTTGATACTATCCGTAACTTCAT
TACAGGTACAGCACTGACACTGGTTATTGATTTATTCTTTGTTTTCGTCTTTTTGGCGGTCATGTGGTACTACAGCTCTG
CACTTACCTGGATAGTACTCGCCACTATCCCGTTTTATATCCTTCTTTCCATTTTCATTACCCCGATATTACGTAAACGT
CTGGATGATAAATTCACCCATGGTGCTGCGAATACGGCTTTTCTGACCGAATCAATGACCGGGATTGGTACCGTTAAATC
CATGGCCGTTGAACCTCAAATGAAACGAAAGCTGGAAGACCATCTTTCCAGCTATGTGCATTCATCTTTCAAAAGTCAGA
ACCTGAACAATGTTGCCAATCAGATAGCCGGTTTAATCAATAAACTGATGACATTGGGCATTATCTGGTGGGGTGCACAT
CTGGTTATCGATAATCAAATCACCGTCGGGCAATTAATCGCCTTTAATATGCTCGCTGGTAGAGTGAGCGGTCCTATTCT
TAAATTGGTCCAGCTATGGCAAGACTTTCAGCAAGCGGGGATTTCTATTAAACGCTTAGGCGATATCCTCAACACGCCGA
GAGAGCCAGGCTTTAATCCCAATCGTTCACGACTGCCAGCTTTACAGGGCGCAGTCACCTTTGACCATATTCGTTTTCGC
TATCGTACTGATGGCGCCACCATTCTGGATGACGTTAGCTTGCAAGTGAAGCCCGGTGAAGTTATCGGTATTGTTGGCCG
TAGTGGCAGTGGCAAAAGTACGATTACCAAACTCATTCAACGATTGTATATCCCAGAATCAGGTCGCATTGCTATTGATG
GTGTGGATTTATCTGTTGTGGATACAGTTTGGTTGCGTAAACAAATTGGTGTGGTATTACAGGAAAACTTTCTGTTTAAC
CGAAGTATCAGAGAAAATATAGCCTTAAGCGATCCCTCTATTCCGATGGAACGCGTTATCGCTGCAGCCAAAACGTCTGG
AGCACATGAATTTATCGTTGATTTGCCCGAAGGCTATGACAACCTGGTCGGTGAGCAAGGCAGTAATTTATCAGGTGGCC
AAAGACAGCGGTTGGCAATAGCCCGCGCTCTTATCAACAATCCTCGAATATTGATTTTTGATGAAGCGACCAGTGCGCTT
GATTACGAGTCTGAACGATTAATTCAGGACAATATGGCCAGCATTTGTAAAGGTCGTACCGTGTTTATCATCGCTCATCG
GTTAACCACTGTCAGACAATGCAATCGTATTTTTGTGATGGACAAAGGTCGCATCGTAGAGGAAGGAAACCATGATGAGT
TGATAGCCAAAAATGGCTACTATGCCAAACTCTATAGCTATCAAAGTCACACACCCGTTTTACATCCTGTTACAGAGAGC
AAGGCCAAAGAAAATCCCAACCTTGAAAAGGCCTACTCATGA

Protein sequence :
MDTGLNTLVAIARFHRLPAEAEQLSHEYGVPGEVFTDTQILQASKALTLKAKILSPKFAQITNGMLPAIAKAKDGSYFIL
ARISNAIKEGDSARPGVLIHDLREKAPESLDQEAFELRWSGEIIAITRRQGLGESLQQKFDISWFIPSLVKYRKLFGEVL
LASFFLQLFALMTPLFFQVVMDKVLVHRGFTTLDVLAVGFFVVVVFEALLGGIRNYVLSHTTNRVDVELGSRLFTHLMAL
PMAYFESRQVGQNVARVRELDTIRNFITGTALTLVIDLFFVFVFLAVMWYYSSALTWIVLATIPFYILLSIFITPILRKR
LDDKFTHGAANTAFLTESMTGIGTVKSMAVEPQMKRKLEDHLSSYVHSSFKSQNLNNVANQIAGLINKLMTLGIIWWGAH
LVIDNQITVGQLIAFNMLAGRVSGPILKLVQLWQDFQQAGISIKRLGDILNTPREPGFNPNRSRLPALQGAVTFDHIRFR
YRTDGATILDDVSLQVKPGEVIGIVGRSGSGKSTITKLIQRLYIPESGRIAIDGVDLSVVDTVWLRKQIGVVLQENFLFN
RSIRENIALSDPSIPMERVIAAAKTSGAHEFIVDLPEGYDNLVGEQGSNLSGGQRQRLAIARALINNPRILIFDEATSAL
DYESERLIQDNMASICKGRTVFIIAHRLTTVRQCNRIFVMDKGRIVEEGNHDELIAKNGYYAKLYSYQSHTPVLHPVTES
KAKENPNLEKAYS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hlyB NP_755448.1 hemolysin B Virulence PAI I CFT073 Protein 3e-177 55
hlyB CAD33760.1 hemolysin B Virulence PAI I 536 Protein 3e-177 55
hlyB CAD42038.1 HlyB protein Virulence PAI II 536 Protein 3e-177 55

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Q7A_1844 YP_006296307.1 RTX toxin transporter VFG1557 Protein 2e-177 55
Q7A_1844 YP_006296307.1 RTX toxin transporter VFG1501 Protein 2e-177 55
Q7A_1844 YP_006296307.1 RTX toxin transporter VFG0907 Protein 1e-177 55
Q7A_1844 YP_006296307.1 RTX toxin transporter VFG0841 Protein 2e-174 54
Q7A_1844 YP_006296307.1 RTX toxin transporter VFG1269 Protein 7e-172 53