Gene Information

Name : Q7A_202 (Q7A_202)
Accession : YP_006294706.1
Strain : Methylophaga sp. JAM1
Genome accession: NC_017857
Putative virulence/resistance : Virulence
Product : RNA polymerase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 211254 - 211751 bp
Length : 498 bp
Strand : -
Note : PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family

DNA sequence :

ATGCCTCCAACACAATTGGAAACCATTTATAAAGACCATCATAATTGGCTTCGGGGATGGCTATATCAAAAAGTTGGTTG
CGATCAGCGTGCCGCGGATCTGGCGCAAGATACGTTTGTTCGTTTATTGCAGGCTCAACACAAACAAACAGACTTTACTC
CAGAACAGCCTCGGGCCTATCTGCGTACCGTTGCCAACGGGCTGGTGATTGATTACTTTCGTCGTCGATCACTGGAAAAT
GCCTATCAGAATGCCTTGGCTAATATGCCGGAAATCACCATGATTTCGGAAGAAGAACGGCTGTTAATTCGTGAAACTCT
GGAGCAGCTGGACGCTCTGATAAACCGGTTGCCAGCGCGTGTCAAAACCATCTTCCTGTTATCGCAGCTGGAAGGGCTGA
CATATGCACAGATTGCTAAACTGACCGACGTTTCATTAAGTACGGTAAAACGCGATATGCAACAGGCGTTTATTCACTGC
CTGACATTATTATGGTGA

Protein sequence :

MPPTQLETIYKDHHNWLRGWLYQKVGCDQRAADLAQDTFVRLLQAQHKQTDFTPEQPRAYLRTVANGLVIDYFRRRSLEN
AYQNALANMPEITMISEEERLLIRETLEQLDALINRLPARVKTIFLLSQLEGLTYAQIAKLTDVSLSTVKRDMQQAFIHC
LTLLW

• Homologs from PAI DB

Gene	GenBank Accn	Product	Virulance or Resistance	PAI or REI	Alignment Type	E-val	Identity
unnamed	AAL08458.1	FecI	Virulence	SRL	Protein	5e-23	44

• Homologs from VFDB (virulence genes)

Gene	GenBank Accn	Product	ID of source DB	Alignment Type	E-val	Identity
Q7A_202	YP_006294706.1	RNA polymerase	VFG1049	Protein	2e-23	44