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Name : Q7A_2329 (Q7A_2329) Accession : YP_006296778.1 Strain : Methylophaga sp. JAM1 Genome accession: NC_017857 Putative virulence/resistance : Unknown Product : DNA-directed RNA polymerase subunit beta Function : - COG functional category : - COG ID : - EC number : 2.7.7.6 Position : 2386968 - 2391044 bp Length : 4077 bp Strand : - Note : PFAM: RNA polymerase Rpb2, domain 3; RNA polymerase Rpb2, domain 6; RNA polymerase beta subunit external 1 domain; RNA polymerase Rpb2, domain 2; RNA polymerase beta subunit; RNA polymerase Rpb2, domain 7; TIGRFAM: DNA-directed RNA polymerase, beta subuni DNA sequence : ATGGCTTATACGTTTACCGAGAAAAAACGGATTCGTAAAGATTTTGGCAAGCGTCCAAGTGTCTTGACCGTTCCAAACTT ACTGGCAACTCAGGTCAATTCCTATCAGGATTTCCTGCAAATGGTCGTCCCTGCTGATGAGCGCAATGCAATGGGTTTGC ATGCGGCATTTCAATCAGTGTTTCCGATTAAGAGTCACACTGGAATGGCTGAACTGCAATATGTCAGCTATCGTCTCGGA ACACCTGCTTTTGACGTTAAGGAATGTCAACTTCGTGGTGTGACCTATGCGGCACCTCTAAGAGTAAAAATGCGTCTGGT TATCTACGATAAAGACGCCCCTGCAAAACAAAAAGTCGTTAAAGACATTAAAGAGCAGGAAGTTTATATGGGTGAAATCC CATTAATGACGGAAAAAGGTAACTTCGTTATTAATGGAACAGAGCGTGTAATCGTTTCGCAATTACATCGCTCCCCAGGT GTGTTCTTTGATAGTGACAAAGGCAAAACACACTCCTCAGGCAAGATTCTTTATAACGCTCGTGTTATTCCTTACCGTGG TTCATGGCTCGACTTTGAATTTGATCCAAAAGATGCTGTTTTTGTACGTATCGACAGACGCCGTAAATTACCAGCATCTA TCTTGTTACGTGCTTTGGAATATAGTAATCAGGAAATCTTGGAGATTTTCTTTGAAAACGATACTTTCACCCGAAAAGAC GATGGTTTTGAATTAGCATTGGAGCCTCAGCGTTTACGTGGACAGTCCGTTCCATTTGAAATTACCAATGCTGCGGGTGA AGTTATTGTTGAGGCTGAGCGCCAGATTACTGGCCGTCATATCCGCCAGATGGAAAAGTCTGCAATGACAACCTTGGCTG TGCCAACGACGTATTTGATTGGTAAGGTCATCGCAAAGGATGTTGTTGATCCTGCTACAGGTGAATTATTAGCTAATGCT AATGATGAAATTACCAGTGACTTGCTTGATGCTTTTGAACGTTTTGGTATCAATGTAATAGATACTATTTACGCAAATGA TCTGGATCATGGTCCATTTATCTCTGATACCTTGCGCCTTGATGAAACACGTAGCGCGTTAGAGGCCAAAGTTGAAATCT ATCGCATGATGCGTCCTGGCGAGCCACCAACTGAAGATGCTGCACAGAATTTATTTACCAGTCTGTTTTTCAGCCAGGAT CGTTATGACCTGTCTAATGTTGGCCGGATGAAGTTTAACCGCCGTTTGGGTCGTGAAGAACTTGATGGTGAGGGAATCTT ATCTAAAGAAGATATCGTAGCTGTTTTGAAAGAATTGATCACTATTCGTAACGGATTTGGTGTTGTCGATGATATTGACC ACCTTGGTAACCGCCGGGTACGAAGTGTTGGCGAAATGGCAGAAAACCAGTTCCGTGTCGGTTTGGTCCGTGTTGAACGT GCCGTTCGTGAACGTCTGAGCATTGCAGAATCTGAAGGTTTGATGCCACAGCAACTCATCAATGCCAAGCCGGTTGCTGC CGCGATTAAAGAATTCTTTGGTTCAAGTCAATTATCACAATTCATGGATCAAAATAACCCACTATCTGAAGTAACTCACA AAAGACGTGTGTCAGCTTTAGGGCCTGGTGGTTTGACGCGCGAGCGAGCGGGCTTTGAGGTTCGTGACGTTCATCCAACA CATTATGGTCGTGTTTGCCCCATTGAAACGCCGGAAGGCCCGAACATCGGGTTGATTAACTCTTTGGCATGTTATGCAAG AACTAATCAATATGGTTTTATTGAAACACCGTACCGTAAAGTAATTGATGGTAAAGCAACTGATGAAATCGTTTATTTGT CTGCAATTGATGAAGGTGAATACCGTATTGCGCAGGCAACTATCAATCTGAATGAAGATTTTTCAATTGCTGACAACATG GTTCCATGTCGTCATAAAAATGAATTTTCCTTAATGCCTTCAGAACAAGTGCAGTTGATGGACGTTTCTCCACGTCAGGT TGTGTCGGTAGCTGCATCATTAATACCGTTCCTGGAACATGATGATGCTAACCGGGCATTGATGGGGTCGAACATGCAAC GTCAGGCGGTACCAACATTACGTGCTGATAAGCCATTAGTCGGTACTGGTATGGAGCGTGTTGTTGCTCAGGATTCAGGT GTCATGGTCACTGCAAAACGTGGCGGAGAGGTGGATTCCGTTGATGCGAGTCGTATCGTTATTCGAGTAAATGATGACGA AACGGAAGATAACGAATCTGGTGTTGATATTTATAACCTGATCAAATATGCCCGTTCCAATCAAAGCACAACGATAAACC AACGTCCGATCGTCAAGCCTGGTGATATTGTTGCCAAAGGTGACGTCCTGGCAGATGGTCCTTCAACTGACAAAGGTGAG TTGGCGCTGGGACAAAATATGCTGGTTGCCTTTATGCCGTGGAATGGTTACAACTTCGAAGATTCGATTTTGTTATCAGA ACGTGTTGTTGAAGAAGATCGTTTCACCACCATTCATATTCAGGAACTGAATTGTCTGGCGCGTGATACCAAGTTAGGTA CTGAAGAAGTAACGGGTGATATTCCCAACGTTAGTGAAAGTGCTCTGGCTAAACTGGATGAATCAGGCATTGTATATGTT GGTGCTGAAGTTAAGCCTGGCGATTTTCTTGTCGGTAAAGTCACTCCTAAAGGTGAAACGCAATTAACACCTGAAGAAAA GCTGCTAAGAGCGATCTTTGGTGAAAAGGCTGCTGACGTTAAGGACTCTTCTTTACGAGTACCTTCAGGTACTTACGGTA CAGTCGTTGATGTTCAAGTTTTCACTCGTGATGGTGTTGAAAAAGACGAACGTACTCGCCAGATTGAAAAAGCAGAACTG GAAAAAGTCTGGGCAGATTTAAAAGATCAACATCGTATTATGGTCGATGACGTTTTTGCTCGGCTGGAACGTAACCTGTC AGGAAAAGTCGCAGATAAAGCGCCTGGTCTGAAGAAAGGTGACAAAATCACCAAGGCATATCTGAAAACCCTGGAGAAAT CTCAGTGGTATGACATTCAGATGGCTTCAGATGAACTGAACGCAATGCTTGAATCTACTGCCAACCAAATCAAGCAGTAT CGTACTGATATGGATGAAGCTTTCCAAATCAAGAAAGATAAGCTGACCTCTGGTCATGATCTGGCGCCAGGCGTTCAACG TATGGTTAAAGTTTTTCTGGCGGTTAAACGTCGTATCCAGCCTGGTGATAAATTGGCTGGTCGTCATGGTAATAAAGGTG TTATTTCAAATATCGTCCCGGTTGAAGATATGCCTTATACCCAGGACGGTCGTCCGGTTGACATCGTTCTGAATCCGCTT GGTGTTCCATCACGTATGAATATCGGTCAGATCTTGGAAGTTCATCTTGGTTGGGCTGCAAAAGGTCTGGGCTATAAGAT CGAAGAAATGCTGCAGCAACAACGAGATATTGCAGAACTGAGAGAGTTCTTGGGCAAGATCTATAACACCAGCGGTAAGA AAGAAGATTTGGATTCATTAAATGATGAAGAAATCATTGAACTAGCTGGCAATCTGCAAGCTGGTGTGCCGATGGCAACA CCAGTATTTGACGGTGCTGACGAAGGCGAAATTAAGGCGATGTTAGATCTTGCTGGCTTACCTACAACAGGCCAGGCAAA ACTTATAGATGGTCGTACGGGGGAAATATTCCATCGACCGGTTACTATTGGTTATATGCACATCCTGAAACTGAATCACT TGGTGGATGACAAAATGCATGCTCGTTCGACTGGCCCTTACAGCCTTGTCACGCAACAGCCGTTGGGTGGTAAAGCTCAG TTTGGTGGTCAGCGATTTGGTGAGATGGAGGTTTGGGCACTGCAAGCATATGGTGCTGCCTATACACTCCAAGAAATGCT GACAGTCAAATCGGATGATGTTAACGGCCGGACCAAGATTTATAAAAACATCGTTGATGGTGATTATCGGATGGATGCAG GTATGCCTGAATCCTTCAAAGTATTAACACGTGAGATTCGCTCACTGGGTATTGATGTCGACCTGGTTGAAGAGTAA Protein sequence : MAYTFTEKKRIRKDFGKRPSVLTVPNLLATQVNSYQDFLQMVVPADERNAMGLHAAFQSVFPIKSHTGMAELQYVSYRLG TPAFDVKECQLRGVTYAAPLRVKMRLVIYDKDAPAKQKVVKDIKEQEVYMGEIPLMTEKGNFVINGTERVIVSQLHRSPG VFFDSDKGKTHSSGKILYNARVIPYRGSWLDFEFDPKDAVFVRIDRRRKLPASILLRALEYSNQEILEIFFENDTFTRKD DGFELALEPQRLRGQSVPFEITNAAGEVIVEAERQITGRHIRQMEKSAMTTLAVPTTYLIGKVIAKDVVDPATGELLANA NDEITSDLLDAFERFGINVIDTIYANDLDHGPFISDTLRLDETRSALEAKVEIYRMMRPGEPPTEDAAQNLFTSLFFSQD RYDLSNVGRMKFNRRLGREELDGEGILSKEDIVAVLKELITIRNGFGVVDDIDHLGNRRVRSVGEMAENQFRVGLVRVER AVRERLSIAESEGLMPQQLINAKPVAAAIKEFFGSSQLSQFMDQNNPLSEVTHKRRVSALGPGGLTRERAGFEVRDVHPT HYGRVCPIETPEGPNIGLINSLACYARTNQYGFIETPYRKVIDGKATDEIVYLSAIDEGEYRIAQATINLNEDFSIADNM VPCRHKNEFSLMPSEQVQLMDVSPRQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGMERVVAQDSG VMVTAKRGGEVDSVDASRIVIRVNDDETEDNESGVDIYNLIKYARSNQSTTINQRPIVKPGDIVAKGDVLADGPSTDKGE LALGQNMLVAFMPWNGYNFEDSILLSERVVEEDRFTTIHIQELNCLARDTKLGTEEVTGDIPNVSESALAKLDESGIVYV GAEVKPGDFLVGKVTPKGETQLTPEEKLLRAIFGEKAADVKDSSLRVPSGTYGTVVDVQVFTRDGVEKDERTRQIEKAEL EKVWADLKDQHRIMVDDVFARLERNLSGKVADKAPGLKKGDKITKAYLKTLEKSQWYDIQMASDELNAMLESTANQIKQY RTDMDEAFQIKKDKLTSGHDLAPGVQRMVKVFLAVKRRIQPGDKLAGRHGNKGVISNIVPVEDMPYTQDGRPVDIVLNPL GVPSRMNIGQILEVHLGWAAKGLGYKIEEMLQQQRDIAELREFLGKIYNTSGKKEDLDSLNDEEIIELAGNLQAGVPMAT PVFDGADEGEIKAMLDLAGLPTTGQAKLIDGRTGEIFHRPVTIGYMHILKLNHLVDDKMHARSTGPYSLVTQQPLGGKAQ FGGQRFGEMEVWALQAYGAAYTLQEMLTVKSDDVNGRTKIYKNIVDGDYRMDAGMPESFKVLTREIRSLGIDVDLVEE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 68 |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 68 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Q7A_2329 | YP_006296778.1 | DNA-directed RNA polymerase subunit beta | NC_002516.2.881699.p | Protein | 0.0 | 73 |
| Q7A_2329 | YP_006296778.1 | DNA-directed RNA polymerase subunit beta | CP004022.1.gene2794. | Protein | 0.0 | 70 |
| Q7A_2329 | YP_006296778.1 | DNA-directed RNA polymerase subunit beta | CP000675.2.gene392.p | Protein | 0.0 | 70 |
| Q7A_2329 | YP_006296778.1 | DNA-directed RNA polymerase subunit beta | CP001138.1.gene4362. | Protein | 0.0 | 69 |
| Q7A_2329 | YP_006296778.1 | DNA-directed RNA polymerase subunit beta | NC_002695.1.914942.p | Protein | 0.0 | 69 |
| Q7A_2329 | YP_006296778.1 | DNA-directed RNA polymerase subunit beta | CP000034.1.gene3741. | Protein | 0.0 | 69 |
| Q7A_2329 | YP_006296778.1 | DNA-directed RNA polymerase subunit beta | CP001918.1.gene250.p | Protein | 0.0 | 69 |
| Q7A_2329 | YP_006296778.1 | DNA-directed RNA polymerase subunit beta | CP000647.1.gene4402. | Protein | 0.0 | 69 |
| Q7A_2329 | YP_006296778.1 | DNA-directed RNA polymerase subunit beta | NC_009085.4918494.p0 | Protein | 0.0 | 68 |
| Q7A_2329 | YP_006296778.1 | DNA-directed RNA polymerase subunit beta | NC_010611.6233925.p0 | Protein | 0.0 | 68 |
| Q7A_2329 | YP_006296778.1 | DNA-directed RNA polymerase subunit beta | NC_011595.7060572.p0 | Protein | 0.0 | 68 |
| Q7A_2329 | YP_006296778.1 | DNA-directed RNA polymerase subunit beta | NC_010410.6003841.p0 | Protein | 0.0 | 68 |
| Q7A_2329 | YP_006296778.1 | DNA-directed RNA polymerase subunit beta | NC_011586.7046027.p0 | Protein | 0.0 | 68 |
| Q7A_2329 | YP_006296778.1 | DNA-directed RNA polymerase subunit beta | NC_010400.5987325.p0 | Protein | 0.0 | 68 |
| Q7A_2329 | YP_006296778.1 | DNA-directed RNA polymerase subunit beta | NC_008702.1.4609796. | Protein | 0.0 | 67 |
| Q7A_2329 | YP_006296778.1 | DNA-directed RNA polymerase subunit beta | CP002695.1.gene18.p0 | Protein | 0.0 | 66 |
| Q7A_2329 | YP_006296778.1 | DNA-directed RNA polymerase subunit beta | NC_011035.1.6448762. | Protein | 0.0 | 65 |
| Q7A_2329 | YP_006296778.1 | DNA-directed RNA polymerase subunit beta | CP001581.1.gene3846. | Protein | 0.0 | 48 |
| Q7A_2329 | YP_006296778.1 | DNA-directed RNA polymerase subunit beta | CP003583.1.gene2745. | Protein | 0.0 | 46 |
| Q7A_2329 | YP_006296778.1 | DNA-directed RNA polymerase subunit beta | AM180355.1.gene120.p | Protein | 0.0 | 46 |
