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Name : rpoB (PIN17_A0965) Accession : YP_006298872.1 Strain : Genome accession: NC_017861 Putative virulence/resistance : Unknown Product : DNA-directed RNA polymerase subunit beta Function : - COG functional category : - COG ID : - EC number : 2.7.7.6 Position : 991266 - 994994 bp Length : 3729 bp Strand : + Note : - DNA sequence : TTGAAGTCGTTCCGCGACTTTTTACAGCTTGATACTCCGCCTGAGGAACGCAAGAATGACGGTTTATATAAGGTCTTCGT AGAGAATTTCCCTATCACCGATACACGCAATAATTTCGTTCTTGAGTTCTTGGATTATTATATCGATCCACCTCGCTATT CTATTTCAGAATGCTTGGAGCGTGGCTTGACATATAGTGTGCCTTTGAAGGCTAAGATGAAGCTCTACTGTACCGACCCA GACCATGAGGATTTTGGAACATTTATTCAAGATGTGTTCCTTGGTACAATTCCTTATATGACAAGTAATGGTACATTTGT TATCAATGGTGCTGAACGTGTGGTTGTATCTCAATTGCACCGTTCTCCGGGTGTGTTCTTTGGTCAAGGTGTTCATGCAA ATGGTACAGTGCTTTACAGTGCTCGTATTATTCCATTCAAGGGCTCTTGGATTGAGTTTGCAACGGACATCAATAATGTA ATGTATGCTTATATTGACCGTAAGAAGAAGTTGCCTGTTACAACGATGCTTCGCGCAATAGGATTTGAAAGCGATAAGGA TATTCTTCAGATTTTCGACCTTTGCGAAGAAGTTAAGGTAAATAAGAAAAACATGAAAGCTGCCTTGGGACGCAAGTTGG CTGGTAATGTTATGAAAAGCTGGAACGAGGACTTCGTTGATGAGGATACAGGTGAAGTAGTTTCTATTGAGCGTAATGAA GTTGTCGTAGAACGTGAAACAGAAATCACTGACGAGAATCTTGATATTATTCTTGAAAGCGGTGTGTCTTCTGTGCTTTT GCATAAAGATGAAGATGTGGCAAACAAGTACTCTATAATCTTCAATACGCTTGCAAAAGACCCCAGCCACTCTGAAATCG AGGCAGTAAACTATATTTACCGTCAGTTGCGTAATGCTGATGCTGCTGATGATGCGAGCGCAAGAGAAGTATTCCAAAAC CTGTTCTTCTCTGATAAACGCTACGACCTCGGTGAAGTAGGTAGATATAGAATTAATAGAAAGTTAGGACTTGACACCGA TATGGACGTTCGTGTCTTAACGAAAGATGATATTATCGAGATTATCAAGTATTTGATAAATCTCGTAAATTCGAATGCAA CAGTTGATGATATTGACCACTTGTCAAACCGTCGTGTTCGCACCGTTGGAGAACAATTAGCAAATCAGTTCTCAATCGGT TTGGCTCGTATGAGTCGTACTATCCGTGAACGTATGAATGTTCGCGACAATGAAGTGTTCCAACCAACTGATTTGATTAA TGCAAAAACTATTTCCAGCGTTATCAACTCCTTCTTTGGTACCAACCCATTGAGTCAATTTATGGACCAAACCAACCCAT TGGCAGAAGTTACGCACAAGCGTCGTCTTTCAGCCTTAGGTCCTGGTGGTCTTTCTCGTGAACGTGCAGGCTTTGAAGTT CGCGACGTCCACTATACACACTATGGTCGCTTGTGTCCTATTGAGTCTCCTGAAGGTCCAAACATTGGTTTGATTTCTTC ATTGTGTCTCTATGCAAAAATTAATGACCTTGGCTTTATTGTAACTCCTTATAGAAAGGTTACAGAGTCAAAGGTTGACT TAGACAACGAACACGTTGTTTATATGACTGCTGAAGAGGAAGAAGATCTCCCAGTAGGACAGGGTAATGCCCCATTGAAT CCAGATGGTACATTTATTCGTGACTATGTAAAGTGTCGCCAAGATGCCGATTATCCAGTAGTAGAACCAAGTCAAGTAGC TTTGATGGACGTTGCTCCACAGCAGATTGCTTCAGTTTCTGCTGGCTTAATTCCATTCTTGGAGCACGATGACGGTCACC GCGCACTGATGGGTTGTAACATGATGCGTCAGGCTGTGCCATTGCTTCATAACGATGCTCCTATTGTAGGAACAGGCTTG GAGAAGCAGGTGTGCGAAGATTCTCGTACGATGGTAACTGCTGAAGGAGATGGCGTTATCGAATATGTGGACGCAACTAC AATTCGTATTCTCTACGACCGAACAGACGATGAAGAGTTTGTAAGTTTCGAGCCAGCGTTAAAGGAGTATCGTATTTCTA AGTTCCGTCGCACCAACCAAAATATGGTGGTAGACCTTCGTCCTATTTGTAATAAGGGACAGCGTGTTAAGAAAGGCGAT ATACTTACTGAAGGTTATGCAACCGAGAACGGTGAATTAGCACTTGGACGCAACCTTCTTGTAGCTTATATGCCTTGGAA GGGCTACAACTACGAAGATGCTGTTGTTATTTCAGAGCGAATGGTTCGTGAAGATGTACTTACATCTGTGCATGTAGACG AGTATTCTCTCGAAGTTCGCGAAACAAAGCGTGGTGTTGAAGAGTTTACAGCCGATATTCCTAATGTTAGCGAAGAGGCA ACAAAGGATCTCGATGAAAACGGTATTATCCGTATTGGTGCACGTGTTGAGCCAGGCGATATAATGATTGGTAAGATTTC TCCAAAGGGAGAAAGCGACCCATCACCAGAAGAAAAGTTGCTCCGTGCCATCTTCGGAGACAAGGCAGGTGATGTTAAAG ACTCTTCTTTGAAAGCCAACCCTTCTTTGAGTGGTGTTGTTATTGACAAGAAATTGTTTGCACGTGCTATCAAGACACGC GAAAGCAAGCGTCACGATAAAGTTACTTTGGCACGTCTTGATGAAGAACAAGAGGCAAAAATCAATGATTTGAAGGACTT GTTGGTTGATAAGCTCCTCGAATTGACAGAAGACAAGGTATCGCAAGGCATTAAGGATTATTCAAATGCAGAGATTATTA CCAAGGGAACAAAGTTCACTATGGCTGCTTTGAAGAACCTTGACTACGAAGGTATCCAGTCAAACGGCTGGACCGACGAT GAGCATACCAACCTCTTGATTCAGAAACTTATAATGAACTTTATTCGTAAGTACAAGCAGATGGATGCTGAACTTAAGCG TAAAAAGTTTGCTATTACCATCGGAGACGAACTCCCATCAGGTGTTCTCCAGATGGCGAAGGTTTACATTGCGAAGAAGC GTAAGATTCAAGTTGGTGATAAACTTGCTGGTCGCCACGGTAACAAGGGTATTGTATCAAAGGTTGTACGTGCAGAAGAT ATGCCGTTCCTCGAAGATGGTCGCCCTGTCGATTTGGTATTGAACCCTATGGGTGTGCCTTCTCGTATGAACCTTGGTCA GATTTTCGAAGCTATCCTTGGTGCAGCAGGTCGCAATTTGGGTGTTAAGTTTGCTACTCCGATTTTCGATGGTGCCAAAC TTGAGGACTTGAAGGAATGGACCGACAAGGCAGGCTTGCCTCCAATGTGCTCTACTTATATCTATGATGGTGAGACTGGA GAACGCTTCGACCAGCCAGCAACAGTGGGTATTACCTACTTCTTGAAGTTGGGACACATGGTTGAAGACAAGATGCACGC ACGTAGCATTGGTCCATACTCACTCATTACGCAGCAGCCACTTGGTGGTAAGGCACAATTTGGTGGACAGCGATTTGGAG AAATGGAAGTTTGGGCTATCGAGGCATTCGGTGCTTCACACGTACTCCAAGAGATTTTGACAATTAAGTCTGACGATGTT GTAGGTCGTTCTAAGGCATACGAGTCTATTGTAAAGGGCGAGCCAATGCCAACACCAGGCATCCCTGAGTCGTTGAACGT GTTGCTCCACGAGCTTCGCGGTCTTGGATTAAGCATCAAACTTGATTAA Protein sequence : MKSFRDFLQLDTPPEERKNDGLYKVFVENFPITDTRNNFVLEFLDYYIDPPRYSISECLERGLTYSVPLKAKMKLYCTDP DHEDFGTFIQDVFLGTIPYMTSNGTFVINGAERVVVSQLHRSPGVFFGQGVHANGTVLYSARIIPFKGSWIEFATDINNV MYAYIDRKKKLPVTTMLRAIGFESDKDILQIFDLCEEVKVNKKNMKAALGRKLAGNVMKSWNEDFVDEDTGEVVSIERNE VVVERETEITDENLDIILESGVSSVLLHKDEDVANKYSIIFNTLAKDPSHSEIEAVNYIYRQLRNADAADDASAREVFQN LFFSDKRYDLGEVGRYRINRKLGLDTDMDVRVLTKDDIIEIIKYLINLVNSNATVDDIDHLSNRRVRTVGEQLANQFSIG LARMSRTIRERMNVRDNEVFQPTDLINAKTISSVINSFFGTNPLSQFMDQTNPLAEVTHKRRLSALGPGGLSRERAGFEV RDVHYTHYGRLCPIESPEGPNIGLISSLCLYAKINDLGFIVTPYRKVTESKVDLDNEHVVYMTAEEEEDLPVGQGNAPLN PDGTFIRDYVKCRQDADYPVVEPSQVALMDVAPQQIASVSAGLIPFLEHDDGHRALMGCNMMRQAVPLLHNDAPIVGTGL EKQVCEDSRTMVTAEGDGVIEYVDATTIRILYDRTDDEEFVSFEPALKEYRISKFRRTNQNMVVDLRPICNKGQRVKKGD ILTEGYATENGELALGRNLLVAYMPWKGYNYEDAVVISERMVREDVLTSVHVDEYSLEVRETKRGVEEFTADIPNVSEEA TKDLDENGIIRIGARVEPGDIMIGKISPKGESDPSPEEKLLRAIFGDKAGDVKDSSLKANPSLSGVVIDKKLFARAIKTR ESKRHDKVTLARLDEEQEAKINDLKDLLVDKLLELTEDKVSQGIKDYSNAEIITKGTKFTMAALKNLDYEGIQSNGWTDD EHTNLLIQKLIMNFIRKYKQMDAELKRKKFAITIGDELPSGVLQMAKVYIAKKRKIQVGDKLAGRHGNKGIVSKVVRAED MPFLEDGRPVDLVLNPMGVPSRMNLGQIFEAILGAAGRNLGVKFATPIFDGAKLEDLKEWTDKAGLPPMCSTYIYDGETG ERFDQPATVGITYFLKLGHMVEDKMHARSIGPYSLITQQPLGGKAQFGGQRFGEMEVWAIEAFGASHVLQEILTIKSDDV VGRSKAYESIVKGEPMPTPGIPESLNVLLHELRGLGLSIKLD |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 46 |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 46 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| rpoB | YP_006298872.1 | DNA-directed RNA polymerase subunit beta | NC_002516.2.881699.p | Protein | 0.0 | 47 |
| rpoB | YP_006298872.1 | DNA-directed RNA polymerase subunit beta | NC_008702.1.4609796. | Protein | 0.0 | 47 |
| rpoB | YP_006298872.1 | DNA-directed RNA polymerase subunit beta | NC_009085.4918494.p0 | Protein | 0.0 | 46 |
| rpoB | YP_006298872.1 | DNA-directed RNA polymerase subunit beta | NC_010611.6233925.p0 | Protein | 0.0 | 46 |
| rpoB | YP_006298872.1 | DNA-directed RNA polymerase subunit beta | NC_011595.7060572.p0 | Protein | 0.0 | 46 |
| rpoB | YP_006298872.1 | DNA-directed RNA polymerase subunit beta | NC_010410.6003841.p0 | Protein | 0.0 | 46 |
| rpoB | YP_006298872.1 | DNA-directed RNA polymerase subunit beta | NC_011586.7046027.p0 | Protein | 0.0 | 46 |
| rpoB | YP_006298872.1 | DNA-directed RNA polymerase subunit beta | NC_010400.5987325.p0 | Protein | 0.0 | 46 |
| rpoB | YP_006298872.1 | DNA-directed RNA polymerase subunit beta | CP000675.2.gene392.p | Protein | 0.0 | 44 |
| rpoB | YP_006298872.1 | DNA-directed RNA polymerase subunit beta | NC_011035.1.6448762. | Protein | 0.0 | 42 |
