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Name : OOM_0633 (OOM_0633) Accession : YP_006316616.1 Strain : Francisella noatunensis Toba 04 Genome accession: NC_017909 Putative virulence/resistance : Unknown Product : DNA-directed RNA polymerase subunit beta Function : - COG functional category : - COG ID : - EC number : 2.7.7.6 Position : 616198 - 620274 bp Length : 4077 bp Strand : + Note : COG0085;rpoB: DNA-directed RNA polymerase, beta subu;(HMMTigr:IPR010243);DNA-directed RNA polymerase, beta subunit, bacterial-type;Molecular Function: DNA binding (GO:0003677), Molecular Function: DNA-directed RNA polymerase activity (GO:0003899), Biologi DNA sequence : ATGTCTTACTCATACGCTGAGAAAAAAAGAATTCGCAAAGAGTTTGGGGTTCTTCCTCATATCTTAGATGTGCCATATTT ACTTTCCATTCAAACAGAGTCATACAAAAAGTTTTTAAATGCAAATGATGCAAAAGGTAGACTTTACTCTGGTCTTGAAT TAGTGCTTAAGCAATCATTTCCTGTTGAAAGTAAAAATGGTCAATATGAACTGCATTATGTTGATTATCAAGTTGGTGAG TCTACTTTTGATGAAACAGAGTGCCAAGTGCGCGGTGCCACATACGATGCACCATTAAATGTGAAGTTGAGATTGGTTGT ATATAATAAAGAGGCTCTTCCTGGTGAGAAAGTCGTAGAAAATATTAGAGAAGAATATGTTTATATGGGCGATATTCCTC TTATGACAACTAATGGTACTTTTATAATTAATGGTACCGAAAGAGTGGTTGTTTCACAGTTGCATAGATCTCCTGGTGTA TTTTTTAGTAAGGATGATTCAGAGGAAGGAACATTTTCGGCACGTATTATTCCTTATAGAGGTTCGTGGCTTGACTTTGA GTTTGACTCAAAAGGTATCATATGGGCTAGAATTGACAGAAAAAGAAAATTTTGCGCTACAGTGATTTTAAAAGCTCTTG GATATACGCAAGAGGAAATATTAAATAAATTCTCTGATAGTAAGACAATAAGTTTTAATAATAAAGGTTTTGCACTTAAG CTTGATGATCTTTCTAATATGAAAGGCGAAGTACTTAAGTTTGATATTATTGATGAAAAAGATAATACGATTGTTAAGAA AAATAAAAAATTAACATCTAGAGATATTAAAAAAATTAAAGACGCAGGAGTTGACTCTGTAGCTATTGATTTTGATTTGG TTAGCACTCTTAGAGTGGCCAAAGATATCGTTAATGAAGTAACAGGTGAAGTGATAGCTTACGCTAATGACGATGTTACA GAAAGTTTATTAGAGTCATGCGTAGAAGTTGGCATGCTTGAATTAGAAGTTATTGATTTTATAACTACTGAAAGAGGTAG GTATATATCAGATACTCTTAAGTATGATCTTACTAAAAATACAGATGAAGCACTTGTAGAAATATATAAAGTTCTTAGAC CAGGTGATCCTCCAGCAGCAGCTTCTGTGAAAGCTCTTTTCGAGGGACTATTCTTTATTGAAAGTAGATATAGCTTATCT GATATTGGTAGAATGAAGCTAAATGCAAGATTAGGTTCTGATAAGGTATCTGGAGATATTTACACTCTAGAAAATAGTGA TATTGTAGGTGTTATCGAAGAGCTTATTAATATCCGTGATGGCAAAGGTAAAGTCGATGATATCGATCATCTAGGCAATA GACGTGTGCGTTCTGTTGGAGAAATGGTTGAGAATCAATTTAGAATAGGTCTTTATCGTGTAGAGAAAGGTATTCGTGAA AGTATGTCGCTAGTTCATAAAGACAAGCTTATGCCTAAAGATATTGTGAACTCTAAGCCAATTACAGCAGCAATTAAAGA ATTCTTTACATCTGGTGCTTTATCGCAGTTTATGGATCAAGACAATCCATTATCAGAGGTTACTCATAAGCGTAGAATTT CTGCATTAGGCCCAGGTGGTTTATCGCGTGATAGAGCTGGTTTTGAGGTTCGTGACGTTCACGCAACTCATTATGGTAGA TTGTGTCCTATTGAGACTCCAGAAGGTCCAAATATTGGTTTGATTAACTCATTGGCAAGTTATGCACGAGTTAATGATTA TGGCTTCTTAGAAGCACCATATAGAAGAGTAGTTAATGGTAAAGTGACTAATGAAATTGAGTACTTATCAGCTATCGATG AAGATCATTATGTGATTGCACAAGCATCAACAAAACTTGATAAAAATAATCATTTTGTAGAAGATCTTATTCAGTGTCGT TCAGGTGGTGAAGCAATATTTACTGAGTCAAGTAGAGTCCAGTATATGGATGTCTCTGCTAAGCAGATGGTTTCAGCAGC TGCAGCATTAATACCATTCTTAGAGCATGATGATGCTAACAGGGTATTGATGGGTGCAAACATGCAACGTCAAGCGGTAC CAACTCTTAAATCTGAAAAGCCTCTGGTAGGTACTGGTATGGAAAAGATTGTTGCTAGAGACTCCGGCAACTGTATTATT GCAAGAAATGCTGGTGAGATAGCAGAAGTTGATTCTAATAGAATAGTTGTTAAAGTTGATACTGAAAAATCTCAAACAAG TAAGTTAGTTGATATTTACAGCTTGACTAAGTTTAAACGCTCAAACAAAAATACTTGTATCAATCAGCGTCCAATAGTTG ATGTTGGAGATAAGATTGAGGCTGGTGATATTTTGGCTGACGGTTTTGCAACTGATTTTGGTGAGTTATCACTTGGTCAT AACCTTATGGTTGCTTTCATGCCGTGGAATGGTTATAACTTTGAGGATTCAATTTTACTTTCTGAAAGAATAGTAAAAGA TGACAAATATACTAGTATCCATATTGAAGAGTTCACATGTGTGGCTCGTGATACTAAGCTAGGTCCTGAAGAAGTAACGG CAGATATTCCAAATGTCAGTGAGTCAAGTCTTGCTAAGCTTGATGAGTCAGGTATTGTTCATATTGGTGCGAATGTTGAG GCAGGTGATATTCTTGTCGCTAAAATTACGCCAAAAGCTGAGCAGCAGTTAACTCCTGAAGAAAGACTTCTTAGAGCGAT CTTTAATGAAAAAGCATCAAATGTTGCTGATAGTTCATTAAAAATGCCTAGTGGTACTTCAGGAACTGTAATCAATGTTC AGGTCTTTGAGAATGATAAAGGTGGTAAGAGCAAAAGAGCTCTTAAAATTGAGAAAGAACTAATTGATAAGGCGCGTAAA GATTTCGATGAAGAATTTGCTGTAATTGAATCTGTAGTTAAATCATCAATCGAGACAGATGTGGTTGGCGCTAAGATACA AAAAGCAAAAGGACTTAAGAAAGGAGCTGTTCTTACAAAAGAATTTTTAGCAACGCTACCTTTTTCTAAGTGGTTAGAAA TCTCTTTTGAAGCTGAAAAACTTGAGCAAAAAATACAGAATGCTAGAGAGTATTATGAAGAAGCAAAAATAGCTGTAGAT GCTAGATTTGAAGCTAAGAAAAAATCTATCACACAAAGCAATGAGCTATCTCCTGGTGTACTTAAAACCGTTAAGGTTTT TGTTGCGATTAAAAAACGTATTCAGCCAGGTGATAAAATGGCTGGACGTCATGGTAACAAAGGTGTTGTTTCAAGAGTAC TACCAATTGAGGATATGCCATATATGGAAGATGGTACTCCAGTAGATGTCTGTTTGAATCCACTAGGTATTCCTTCGCGT ATGAATATCGGTCAGATTCTTGAGGCTCACTTAGGATTAGCGTCTTACGGCTTAGGTAAGAAAGTAGAGCAAACTCTAGA AAAAACAAGAAAAGCAGCAGAGTTAAGAAAAACTCTAGAAGAAGTCTATAACAGTGTTGGTGATAAAAAAGTTGATCTTA AGGCTTTAAATGACGAAGAGATACTGAATCTTTGTGAAAATCTAAAAGGGGGAGTACCAATTGCAACTCCTGTATTTGAT GGTGCAAAAGAGGAAGATATTAAGTCTTTACTAAAAATAGGAGGCTTTGTAACTAATGGTCAGATGAAATTGTTTGATGG TCGTACTGGTAAGCCATTTGATAGGCATGTAACCGTTGGTTATATGTATATGCTTAAGTTAGACCACTTGGTAGATGATA AAATGCATGCTAGATCAACTGGATCTTACAGTCTAGTTACGCAGCAACCGTTAGGTGGTAAAGCGCAATTTGGTGGTCAA AGATTCGGTGAGATGGAAGTTTGGGCGTTACAAGCATATGGTGCTGCTTATACTCTAAGAGAGATGTTAACGGTTAAGTC AGATGATATAACTGGTAGATCTAAGATGTATAAGAATATAGTTGATGGTAAGTTAACTATGAATGTAGATGTTCCAGAAT CATTTAATGTTTTAAGAAATGAAGTTAGAGCATTGGGAATAGATATGGATTTTGACTACTCATCTGAGGAAGAATAA Protein sequence : MSYSYAEKKRIRKEFGVLPHILDVPYLLSIQTESYKKFLNANDAKGRLYSGLELVLKQSFPVESKNGQYELHYVDYQVGE STFDETECQVRGATYDAPLNVKLRLVVYNKEALPGEKVVENIREEYVYMGDIPLMTTNGTFIINGTERVVVSQLHRSPGV FFSKDDSEEGTFSARIIPYRGSWLDFEFDSKGIIWARIDRKRKFCATVILKALGYTQEEILNKFSDSKTISFNNKGFALK LDDLSNMKGEVLKFDIIDEKDNTIVKKNKKLTSRDIKKIKDAGVDSVAIDFDLVSTLRVAKDIVNEVTGEVIAYANDDVT ESLLESCVEVGMLELEVIDFITTERGRYISDTLKYDLTKNTDEALVEIYKVLRPGDPPAAASVKALFEGLFFIESRYSLS DIGRMKLNARLGSDKVSGDIYTLENSDIVGVIEELINIRDGKGKVDDIDHLGNRRVRSVGEMVENQFRIGLYRVEKGIRE SMSLVHKDKLMPKDIVNSKPITAAIKEFFTSGALSQFMDQDNPLSEVTHKRRISALGPGGLSRDRAGFEVRDVHATHYGR LCPIETPEGPNIGLINSLASYARVNDYGFLEAPYRRVVNGKVTNEIEYLSAIDEDHYVIAQASTKLDKNNHFVEDLIQCR SGGEAIFTESSRVQYMDVSAKQMVSAAAALIPFLEHDDANRVLMGANMQRQAVPTLKSEKPLVGTGMEKIVARDSGNCII ARNAGEIAEVDSNRIVVKVDTEKSQTSKLVDIYSLTKFKRSNKNTCINQRPIVDVGDKIEAGDILADGFATDFGELSLGH NLMVAFMPWNGYNFEDSILLSERIVKDDKYTSIHIEEFTCVARDTKLGPEEVTADIPNVSESSLAKLDESGIVHIGANVE AGDILVAKITPKAEQQLTPEERLLRAIFNEKASNVADSSLKMPSGTSGTVINVQVFENDKGGKSKRALKIEKELIDKARK DFDEEFAVIESVVKSSIETDVVGAKIQKAKGLKKGAVLTKEFLATLPFSKWLEISFEAEKLEQKIQNAREYYEEAKIAVD ARFEAKKKSITQSNELSPGVLKTVKVFVAIKKRIQPGDKMAGRHGNKGVVSRVLPIEDMPYMEDGTPVDVCLNPLGIPSR MNIGQILEAHLGLASYGLGKKVEQTLEKTRKAAELRKTLEEVYNSVGDKKVDLKALNDEEILNLCENLKGGVPIATPVFD GAKEEDIKSLLKIGGFVTNGQMKLFDGRTGKPFDRHVTVGYMYMLKLDHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQ RFGEMEVWALQAYGAAYTLREMLTVKSDDITGRSKMYKNIVDGKLTMNVDVPESFNVLRNEVRALGIDMDFDYSSEEE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 57 |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 57 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| OOM_0633 | YP_006316616.1 | DNA-directed RNA polymerase subunit beta | NC_002695.1.914942.p | Protein | 0.0 | 59 |
| OOM_0633 | YP_006316616.1 | DNA-directed RNA polymerase subunit beta | CP001918.1.gene250.p | Protein | 0.0 | 59 |
| OOM_0633 | YP_006316616.1 | DNA-directed RNA polymerase subunit beta | CP000034.1.gene3741. | Protein | 0.0 | 59 |
| OOM_0633 | YP_006316616.1 | DNA-directed RNA polymerase subunit beta | CP001138.1.gene4362. | Protein | 0.0 | 59 |
| OOM_0633 | YP_006316616.1 | DNA-directed RNA polymerase subunit beta | CP000647.1.gene4402. | Protein | 0.0 | 59 |
| OOM_0633 | YP_006316616.1 | DNA-directed RNA polymerase subunit beta | NC_002516.2.881699.p | Protein | 0.0 | 59 |
| OOM_0633 | YP_006316616.1 | DNA-directed RNA polymerase subunit beta | CP004022.1.gene2794. | Protein | 0.0 | 58 |
| OOM_0633 | YP_006316616.1 | DNA-directed RNA polymerase subunit beta | CP000675.2.gene392.p | Protein | 0.0 | 58 |
| OOM_0633 | YP_006316616.1 | DNA-directed RNA polymerase subunit beta | NC_009085.4918494.p0 | Protein | 0.0 | 57 |
| OOM_0633 | YP_006316616.1 | DNA-directed RNA polymerase subunit beta | NC_010410.6003841.p0 | Protein | 0.0 | 57 |
| OOM_0633 | YP_006316616.1 | DNA-directed RNA polymerase subunit beta | NC_011586.7046027.p0 | Protein | 0.0 | 57 |
| OOM_0633 | YP_006316616.1 | DNA-directed RNA polymerase subunit beta | NC_010400.5987325.p0 | Protein | 0.0 | 57 |
| OOM_0633 | YP_006316616.1 | DNA-directed RNA polymerase subunit beta | NC_010611.6233925.p0 | Protein | 0.0 | 57 |
| OOM_0633 | YP_006316616.1 | DNA-directed RNA polymerase subunit beta | NC_011595.7060572.p0 | Protein | 0.0 | 57 |
| OOM_0633 | YP_006316616.1 | DNA-directed RNA polymerase subunit beta | NC_008702.1.4609796. | Protein | 0.0 | 56 |
| OOM_0633 | YP_006316616.1 | DNA-directed RNA polymerase subunit beta | CP002695.1.gene18.p0 | Protein | 0.0 | 55 |
| OOM_0633 | YP_006316616.1 | DNA-directed RNA polymerase subunit beta | NC_011035.1.6448762. | Protein | 0.0 | 55 |
| OOM_0633 | YP_006316616.1 | DNA-directed RNA polymerase subunit beta | AE016830.1.gene3155. | Protein | 0.0 | 44 |
| OOM_0633 | YP_006316616.1 | DNA-directed RNA polymerase subunit beta | CP003583.1.gene2745. | Protein | 0.0 | 44 |
| OOM_0633 | YP_006316616.1 | DNA-directed RNA polymerase subunit beta | NC_012469.1.7686402. | Protein | 1e-178 | 42 |
