Gene Information

Name : PflA506_1985 (PflA506_1985)
Accession : YP_006323473.1
Strain : Pseudomonas fluorescens A506
Genome accession: NC_017911
Putative virulence/resistance : Virulence
Product : ECF subfamily RNA polymerase sigma-70 factor
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2169176 - 2169691 bp
Length : 516 bp
Strand : -
Note : identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM PF08281; match to protein family HMM TIGR02937

DNA sequence : 
ATGTCGAGCAATCACCCACTGGACCTTGCTGCCATCGGCCAGCTTTACCAAGCCCACCATTCCTGGCTGCGGGGCTGGTT
GAGCCGGCGCACGGGTTGCCATGAGCGCGCCGCCGACCTCGCGCAGGACACCTTCGTGCGCCTGCTCAACGCGCGTCAGC
AACAGACCTTGCAGCAGCCGCGCGCGTACCTGAGCAGCATCGCGCGCAGCTTGATGATCGACCAATACCGGCGCCGCGAA
CTGGAACGCGCCTACCTGGAAAGCCTGGCGCACTTTGCGCAAATGGAGGTGCCGAGCGAGGAAACACGGCTGCTGATCCT
CGACAGCCTGGAGCGCATCGACCGTTTGCTCGACCAGCTCAAGCCACGGGTGCGCGAGGCGTTTCTGTTGGCCCAATTGG
ACGGCCTGACCTGTCCACAGATCGCCCTGCGCCTGGGCGTGTCCAAGGCCACAGTGGAGCGCGACCTGTCCAAGGCGCTG
CACGCCTGTTACCGGTTGCGCTATGCCGACTCCTGA

Protein sequence : 
MSSNHPLDLAAIGQLYQAHHSWLRGWLSRRTGCHERAADLAQDTFVRLLNARQQQTLQQPRAYLSSIARSLMIDQYRRRE
LERAYLESLAHFAQMEVPSEETRLLILDSLERIDRLLDQLKPRVREAFLLAQLDGLTCPQIALRLGVSKATVERDLSKAL
HACYRLRYADS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAL08458.1 FecI Virulence SRL Protein 5e-25 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PflA506_1985 YP_006323473.1 ECF subfamily RNA polymerase sigma-70 factor VFG1049 Protein 2e-25 44