Gene Information

Name : PflA506_2220 (PflA506_2220)
Accession : YP_006323703.1
Strain : Pseudomonas fluorescens A506
Genome accession: NC_017911
Putative virulence/resistance : Virulence
Product : RNA polymerase sigma factor, FecI family
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2389056 - 2389571 bp
Length : 516 bp
Strand : -
Note : identified by similarity to SP:P23484; match to protein family HMM PF04542; match to protein family HMM PF08281; match to protein family HMM TIGR02937

DNA sequence :
ATGAGCGAAAGCCTTCCCGCCGATAACACCCCTCACCTGCGCGCAATCGAGGCGCTGTACAGCGGCCATCACGGCTGGCT
GTACGCCACGCTCAAACGCAAACTCGGCAATGCCATGGATGCGGCGGACCTGGCCCAGGACACCTTCACCCGCATCCTGG
CCTCGCAGGTCACGGTGATTGACCAGCCACGCGCCTACCTGAGCTGCGTGGCCAAGGGCATCCTGGTCAACTGGTACCAG
CGCAAGGCCCTGGAACGTGCCTATCTGGAAGCGCTCGCCAGCGTGCCGGCCCACGAGGTGCCGTCGCCGGAAGCGCACTT
TCTGGTGCTGGAGACCCTGCACGAAATCGACGCAATGCTTGACGCGCTGCCGCCGCTGGTCAAGCGTGCGTTCCTGCTGT
CGCAGCTCAACGGCCTCAAATACCAGGACATCGCCGAGCAATTGGGCGTGTCGCTGATTACCGTCAAGCGCTACATGAAA
CAGGCACTCGTCCAGTGCCTGATGCGGGTGGAATAA

Protein sequence :
MSESLPADNTPHLRAIEALYSGHHGWLYATLKRKLGNAMDAADLAQDTFTRILASQVTVIDQPRAYLSCVAKGILVNWYQ
RKALERAYLEALASVPAHEVPSPEAHFLVLETLHEIDAMLDALPPLVKRAFLLSQLNGLKYQDIAEQLGVSLITVKRYMK
QALVQCLMRVE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAL08458.1 FecI Virulence SRL Protein 2e-33 50

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PflA506_2220 YP_006323703.1 RNA polymerase sigma factor, FecI family VFG1049 Protein 6e-34 50