Gene Information

Name : tssB2 (PflA506_2408)
Accession : YP_006323891.1
Strain : Pseudomonas fluorescens A506
Genome accession: NC_017911
Putative virulence/resistance : Virulence
Product : type VI secretion protein TssB2
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2623840 - 2624337 bp
Length : 498 bp
Strand : +
Note : identified by similarity to GB:AAG05046.1; match to protein family HMM PF05591; match to protein family HMM TIGR03358

DNA sequence : 
ATGGCCAAAGACGGTTCGGTAGCCCCCAAGGAACGTATCAATATTACCTTCAAACCCGCGGTCGGTAGCGCTCAGGAAGA
TGTCGAACTGCCGTTGAAGCTGCTGGTGCTGGGGGATTTTTCCCAGCGCGCGGACCCACGCAAACTCGAAGATCGCAAGC
CCATCGGTATCGACAAGCACACCTTTGACGAGGTGTTGGCCAAGCAAGCATTGAGCCTGACGCTGAGCGTTCCCAACCGC
CTCCAGGATGCAGCCGACGTGGAAGAACTGCCGGTTCAGGTGCGAATTAACACCATGAAGGACTTCAACCCCGCGAACCT
GGTGGAGCAGATCCCGCAATTGCAAAAGTTGATGGCATTGCGTGAGGCATTAGTGGCGCTCAAGGGACCGCTGGGCAATA
CGCCCAGCTTTCGCAACGCTATCGAGCGGGCGTTGGCCAATGGTGACTCTCGCGCACGAGTGCTCGCCGAACTGGGCCTG
GATAGGCCTCAAGCCTGA

Protein sequence : 
MAKDGSVAPKERINITFKPAVGSAQEDVELPLKLLVLGDFSQRADPRKLEDRKPIGIDKHTFDEVLAKQALSLTLSVPNR
LQDAADVEELPVQVRINTMKDFNPANLVEQIPQLQKLMALREALVALKGPLGNTPSFRNAIERALANGDSRARVLAELGL
DRPQA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
HH0248 NP_859779.1 hypothetical protein Not tested HHGI1 Protein 6e-31 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
tssB2 YP_006323891.1 type VI secretion protein TssB2 VFG2474 Protein 4e-38 51
tssB2 YP_006323891.1 type VI secretion protein TssB2 VFG2092 Protein 3e-39 50