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Name : secD (PflA506_4382) Accession : YP_006325798.1 Strain : Pseudomonas fluorescens A506 Genome accession: NC_017911 Putative virulence/resistance : Unknown Product : protein-export membrane protein SecD Function : - COG functional category : - COG ID : - EC number : - Position : 4836972 - 4838840 bp Length : 1869 bp Strand : - Note : identified by match to protein family HMM PF02355; match to protein family HMM PF07549; match to protein family HMM TIGR00916; match to protein family HMM TIGR01129 DNA sequence : ATGCTGAACAAATACCCTCTGTGGAAATACGTACTGATCCTGGCGGTGCTGGCGATCGGTTTTATTTATTCCGCTCCCAA TCTCTATCCTGATGACCCGGCGATCCAGATCTCTGGCGCCAGCACTTCGCTGCAAGTCAATCAGGCTGACCTGGACCGTG CGAGCAAAGCGCTCACCGACGCGGGTATCCAGGTTAAAGCGGCAACCTTGGCGGCTGGATCCAAAGGCGGCTTGTTGCGC CTGACCAAGCAAGAAGACCAATTGCCGGCCAAAGATGTCGTACGCAAGGCCATGGGTGACGACTACGTTGTCGCGCTCAA CCTGGCCCAGACCACGCCACAATGGCTGCGCAGCATTGGCGCGCACCCGATGAAGCTGGGTCTGGACTTGTCCGGCGGTG TGCACTTCCTGCTGGAAGTCGACATGGACAAGGCCCTGGACGCACGTCTGAAGGTCTACGAAGGCGACGTGAAGAGCCTC CTGCGCAAAGAGAAGCTGCGTTATCGCAGCCTGCCGCAGCTCAATGGCGCCATCCAGCTGGGCTTTGCTGACGAAGCATC CCGCGAACAGGCCCGTGCGCTGATCCGCAAGAACTTCAATGACTTCGACATCGTGCCTGCCGACCTGAACGGCCAAGCGG TACTGCGTCTGGCGATGAGCCCGGCCAAGATCGCTGAAATCCGCGAATACTCCATCAAGCAGAACCTGACCACGGTCCGT AACCGCGTCAACGAGCTGGGTGTGGCAGAGCCGATCGTGCAGCGCCAGGGCGCCAACCGCATCGTGGTTGAGCTGCCAGG CGTACAGGACACCGCTGAAGCCAAGCGTATCCTCGGCAAGACCGCCAACCTGGAGTTCCGTCTCGCGGCAGACCCAGGCG CTACGCGTGCCACTTCCGAAGAATTCGAATTCCGTGAAGGCAACCGTCCTCCTGCGCTGATCGAGCGTGGCTTGATCATC ACCGGTGACCAGGTGACCGACGCCAAGGCCGGTTTCGGCGAGCACGGCACGCCTGAAGTGAACATCCGTCTGGATGGCCA TGGCGGCGAACTGATGAGCCGCGCCACGCGCAGCAACGTTGGTCGCAGCATGGCGGTGATCTTCATCGAGCAGCGCCCGG TGACCACCTACACCAAGCAAATGGTCAATGGCGTCGAGAAAGACGTGCCAGTGCAGACCTTCAAGGAAGAGAAGAAGATC ATCAGCCTGGCGACCATTCAGTCGCCGCTGGGTGCTCAGTTCCGCATCACTGGCCTGAACGGCCAGGGCGAGTCTTCCGA GCTGGCGTTGCTGCTGCGTGCCGGTGGCCTGGCGGCACCGATGTACTTCGCTGAAGAACGTACCATCGGCCCGAGCCTGG GTGCCGACAACATCACCAAGGGTGTCGATGCCGCGCTGTGGGGCATGCTGTTCGTGTCGCTGTTCATCATCGCCATCTAC CGCTTCTTTGGTGTGATCGCCACTGTCGCCCTGGCGGGCAACATGGTGATGCTGCTGGCGTTGATGTCGTTGCTGGGCGC CACACTGACCCTGCCAGGTATCGCCGGTATCGTACTCACCATGGGTATGGCGGTGGACGCCAACGTGCTGATCTTCTCGC GGATTCGTGAAGAGATCGCCGCCGGCATGACCGTGCAGCGTGCAATCAACGAAGGCTTCGGCCGGGCATTTACCGCGATC CTCGACTCCAACCTGACCACACTGTTGGTCGGCGGGATTCTCTTCGCCATGGGCACAGGCCCGGTGAAAGGTTTTGCGGT GACCATGTCCCTCGGGATCTTTACCTCGATGTTCACGGCCATCATGGTGACCCGCGCAATGGTCAACCTGATCTTTGGCG GGCGTGACTTCAAGAAGTTGTGGATTTAA Protein sequence : MLNKYPLWKYVLILAVLAIGFIYSAPNLYPDDPAIQISGASTSLQVNQADLDRASKALTDAGIQVKAATLAAGSKGGLLR LTKQEDQLPAKDVVRKAMGDDYVVALNLAQTTPQWLRSIGAHPMKLGLDLSGGVHFLLEVDMDKALDARLKVYEGDVKSL LRKEKLRYRSLPQLNGAIQLGFADEASREQARALIRKNFNDFDIVPADLNGQAVLRLAMSPAKIAEIREYSIKQNLTTVR NRVNELGVAEPIVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLAADPGATRATSEEFEFREGNRPPALIERGLII TGDQVTDAKAGFGEHGTPEVNIRLDGHGGELMSRATRSNVGRSMAVIFIEQRPVTTYTKQMVNGVEKDVPVQTFKEEKKI ISLATIQSPLGAQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDAALWGMLFVSLFIIAIY RFFGVIATVALAGNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIAAGMTVQRAINEGFGRAFTAI LDSNLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTAIMVTRAMVNLIFGGRDFKKLWI |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| secD | AAT96039.1 | SecD | Not tested | T-PAI | Protein | 0.0 | 89 |
| secD | AAT96067.1 | SecD | Not tested | T-PAI | Protein | 0.0 | 89 |
| secD | AAT96119.1 | SecD | Not tested | T-PAI | Protein | 0.0 | 89 |
| secD | AAT96103.1 | SecD | Not tested | T-PAI | Protein | 0.0 | 89 |
| secD | AAT96179.1 | SecD | Not tested | T-PAI | Protein | 0.0 | 88 |
