|
Name : rscC (PflA506_0708) Accession : YP_006322237.1 Strain : Pseudomonas fluorescens A506 Genome accession: NC_017911 Putative virulence/resistance : Virulence Product : type III secretion outer membrane protein RscC Function : - COG functional category : - COG ID : - EC number : - Position : 822985 - 825126 bp Length : 2142 bp Strand : - Note : identified by match to protein family HMM PF00263; match to protein family HMM PF03958; match to protein family HMM TIGR02516 DNA sequence : ATGTCTAACAAGACCCATAAGGGCAATCGCTCGTACCTTGGCTCGCCTGCCGTTACAGCCAAAAGAACCCACTGGCGGAA TGTGTTTTTGTTTTCCTGGTTGCTGGTTTCAGCACAAAGCGCGCTGGCCGCCATCCCTTCGGAATGGAAAAACACCGCCT ACGCTTATGAAGCCGAGCATAAGCCGGTGCGCGAGGTACTCGAAGATTTCGCCCAGACCTTCGGTACACAGCTGCAGATC GAGGGCCTGCTGGAAGGCATCGTCAATGGCAAGATACGCGCTAACACCCCGCAGTCATTGCTCGACCGCCTGGGGGTAGA GCATCGCTTCCAATGGTACCTGTACAACAACACGCTCTACGTCAGTACTCTGGACCAGCAAGAGTCAGCGCGCCTGGAGG TCTCCTCCGAGACCATTGCCGACCTCAAGCAAGCCCTCACTGATATCGGCCTGCTCGACAGCCGCTTCGGTTGGGGTGAG TTGCCCGACGATGGCATCGTGTTGGTCTCAGGGCCTCGGCGCTATATCGAGCAAGTCAAACAGTTCAGCAGCCAACGCCG CTCGGTGGACGAAAAACAGAGCGTGCTGAGTTTCCCGCTGAAGTTTGCCAATGCAGCGGATCGCCACGTGGATTATCGCG GCCAGAAGATCACCATTGCCGGTGTTTCCAGCATTGTGCGGGGCTTACTGGAGCCACGCTCCAACGCGACACCCCCTGCG TTAGCCCAGCGCCCCGCCTCACAGCCCGCCCCTCTCGTACCCAACGTTCCCCGCTTGAGCAACCCGTTGCTGGGGCAGAT GCTCGCTACAAACAGCACTCCCATGCCAATGGATATTGGCGCCACACTCACCCCGCGGGCGCCGGCCCCCACCAGTCGCA TTCGCGTCGAAGCCGATATGCGCAATAACGCGGTGCTCATTTATGACCTGCCAGAGCGCCAGGCCATGTACCGCGAGTTG ATCGCTCAACTCGATGTGGCGCGCAAGTTGGTGGAAATCGATACGATCATTCTGGATATCGAGCGCACCCAATTGCGTGA ATTCGGCGTGAACTGGGGGTTTCAGAACAGCCGTTTCCGTGGTGGTGCAAATATGGCGCCCGGCACATCGCAGCAGTTGT CGATCGAGAATCGCGACCGTTTCTATGCTGACATACGCGCCCTGGAAGCCAAGGGGCTGGCGACCATGGTGTCCAACCCC TCCGTGCTCACCCTGGAAAACCAACCGGCGGTGATCGACTTCAACCGCACTCAGTACCTGACACCCGGTCGTCAGAACGC AACCATCCTGCCGGTCACCGTGGGTACCAGCGTGCAGGTCGTGCCCCGCGTCATCACCAGCCGAGGCAGCCATCAGATTC ACTTGGTGGTGGATATCGAGGACGGTACGTTCGATGAGTCCAACCCCAATCGTGACCTCAATAACTTGGATGTGCGCCGC GGTAACGTCAGTACCCAGGCGGTCATGGCGGAAAAACGCTCAATGGTGGTGGGCGGATTCCATGTCACGGAAAGCACCGA CAAGCACAACAAGGTGCCGCTGCTGGGCGATATCCCACTGCTGGGCAAGGCGTTGTTCTCTTCAAGCGAACGGCAGAACA ATCGGCGTGAACGCCTGTTCATCATCACCCCACGCGTCATCGGCGACCAGGCCGATCCGTCCCGCTACTTGCCTCAGGCA GACCAGGCCGAGTTGCAGACGGCCCTTGCACCACTGGCCAGGCGCAACGCCCCTCACCAGCCCGAGATCAAGCGTAGCGA CATCATCAGCACGTTGGCGCATCTGGTGACGGGAGAAGTGCCCAAGGCCTTCAAGTTGGCGCCCATGCCCCTGGGATTGA ACACGCTGTGCAGCCCCCGCGACTTGCTGGCGCTGAACACCGAGCGCAGCCAATGGTACGCAGGCCCCGAGTACAACGTC GCCGTCGTGGTGATGCGCAACCAGTTCAACCGCAATGTGCGCATCGATGAAAAAGAATGCAGCAACTCGCAGACTTTGGC CGTCACCGTGTGGCCACGCGCCTGGTTGAAGCCGGGAGAAGAAGCCGAAGTCTTTATCGCCATGCGCCCGGTGAAGAAGG ATGAACACCTCAGCGTACCGCGCCCTACCTTGATTACTCCTGTCAAAAAGGCCCGACCATGA Protein sequence : MSNKTHKGNRSYLGSPAVTAKRTHWRNVFLFSWLLVSAQSALAAIPSEWKNTAYAYEAEHKPVREVLEDFAQTFGTQLQI EGLLEGIVNGKIRANTPQSLLDRLGVEHRFQWYLYNNTLYVSTLDQQESARLEVSSETIADLKQALTDIGLLDSRFGWGE LPDDGIVLVSGPRRYIEQVKQFSSQRRSVDEKQSVLSFPLKFANAADRHVDYRGQKITIAGVSSIVRGLLEPRSNATPPA LAQRPASQPAPLVPNVPRLSNPLLGQMLATNSTPMPMDIGATLTPRAPAPTSRIRVEADMRNNAVLIYDLPERQAMYREL IAQLDVARKLVEIDTIILDIERTQLREFGVNWGFQNSRFRGGANMAPGTSQQLSIENRDRFYADIRALEAKGLATMVSNP SVLTLENQPAVIDFNRTQYLTPGRQNATILPVTVGTSVQVVPRVITSRGSHQIHLVVDIEDGTFDESNPNRDLNNLDVRR GNVSTQAVMAEKRSMVVGGFHVTESTDKHNKVPLLGDIPLLGKALFSSSERQNNRRERLFIITPRVIGDQADPSRYLPQA DQAELQTALAPLARRNAPHQPEIKRSDIISTLAHLVTGEVPKAFKLAPMPLGLNTLCSPRDLLALNTERSQWYAGPEYNV AVVVMRNQFNRNVRIDEKECSNSQTLAVTVWPRAWLKPGEEAEVFIAMRPVKKDEHLSVPRPTLITPVKKARP |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| hrcC | ABA47303.1 | HrcC | Virulence | S-PAI | Protein | 2e-151 | 48 |
| hrcC | AAT96206.1 | HrcC | Virulence | T-PAI | Protein | 4e-144 | 46 |
| hrcC | AAT96354.1 | HrcC | Virulence | S-PAI | Protein | 8e-143 | 46 |
| hrcC | AAB05085.2 | HrcC | Virulence | Hrp PAI | Protein | 6e-145 | 45 |
| hrcC | AAT96152.1 | HrcC | Virulence | T-PAI | Protein | 1e-142 | 45 |
| hrcC | AAT96274.1 | HrcC | Virulence | S-PAI | Protein | 9e-142 | 45 |
| hrcC | AAT96315.1 | HrcC | Virulence | S-PAI | Protein | 4e-142 | 45 |
| hrcC | NP_791216.2 | outer-membrane type III secretion protein HrcC | Virulence | Hrp PAI | Protein | 9e-146 | 44 |
| hrcC | AAC34756.1 | HrcC | Virulence | Hrp PAI | Protein | 2e-137 | 43 |
| hrcC | AAB49179.1 | HrcC | Virulence | Hrp PAI | Protein | 2e-134 | 42 |
