Gene Information

Name : YSA_05309 (YSA_05309)
Accession : YP_006386751.1
Strain : Pseudomonas putida ND6
Genome accession: NC_017986
Putative virulence/resistance : Virulence
Product : ECF subfamily RNA polymerase sigma-24 factor
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2858933 - 2859436 bp
Length : 504 bp
Strand : -
Note : -

DNA sequence : 
ATGCCCAGCAACGATTCCGTGCAAACGCTCTACAGTGACCACCACGGCTGGTTGCATACCTGGCTGCGTAGCAAGCTCGG
CAACGCAGCCGATGCGGCTGACCTCGCCCAAGATACCTTCGTCCGCTTGCTACAGCGTCGTGAACAATTGCAGCTGAATG
CTCCCAGGGCCTTCCTGCGCACGGTAGCGCGTGGGTTGGTGATCGATCATTGGCGCCGCGAGGAACTGCACAGGGCCTAC
CTGGAGGCTTTGGCCCATGTGCCGGAAGCACTGGCCCCCTCAGTCGAGACCCGCGAGCTGCTGCTGGAATTGCTTGAGCG
TATTGCACGCATGCTCGACGGCCTCAAACCCAAGGTCCGTCGCGCATTCCTGCTGGCTCAATGCGAGGGGCTGAAGCATC
AGGCCATCGCCGAACAGATGGGGATCTCCGTGCGCACCGTTGAGCGCTATATCGCCGATGCGCTCTATCACTGCTACGTG
CTGCGCTATGAAGACGACTGCTGA

Protein sequence : 
MPSNDSVQTLYSDHHGWLHTWLRSKLGNAADAADLAQDTFVRLLQRREQLQLNAPRAFLRTVARGLVIDHWRREELHRAY
LEALAHVPEALAPSVETRELLLELLERIARMLDGLKPKVRRAFLLAQCEGLKHQAIAEQMGISVRTVERYIADALYHCYV
LRYEDDC

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAL08458.1 FecI Virulence SRL Protein 1e-29 47

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
YSA_05309 YP_006386751.1 ECF subfamily RNA polymerase sigma-24 factor VFG1049 Protein 6e-30 47