Gene Information

Name : YSA_05717 (YSA_05717)
Accession : YP_006386984.1
Strain : Pseudomonas putida ND6
Genome accession: NC_017986
Putative virulence/resistance : Virulence
Product : RNA polymerase sigma factor
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3097608 - 3098126 bp
Length : 519 bp
Strand : -
Note : -

DNA sequence :

TTGTCTTCTGCACAAAGCCCACACGCCGATCTGGTCGGTGCGCTGTACCGCGACCACCGCGGCTGGCTGCTCGCCTGGCT
GCAACGCAGCATGGCCTGCCGCCAACGTGCCGAAGACCTGAGCCAGGACACCTTCGTGCGCCTGCTTGGTCGTGAGCAAC
TGGAGACACCCCGCGAACCCCGCGCGTTTCTGGCCGCCGTGGCCAAGGGGCTGATGTTCGACCACTTCCGTCGCACCGCG
CTGGAACAAGCCTACCTGGCCGAGCTGGCATTGATCCCTGAAGCCGAACAGCCGTCGCCAGAAATGCAGCACCTGATCCT
TGAAGACCTCAAAGCCATCGACCGCCTGCTCGGCAAGCTGTCGAGCAAGGCTCGCGCGGCGTTTCTGCACAGCCGCCTGG
ACGGCATGGGCCATGCCGAGATTGCCGAGCGCCTTGGCGTTTCGGTGTCGCGGGTGCGCCAGTACATCGCCCAAGGGATG
CGCCAGTGCTATGTAGCCCTGTATGGGGAGCCGACGTGA

Protein sequence :

MSSAQSPHADLVGALYRDHRGWLLAWLQRSMACRQRAEDLSQDTFVRLLGREQLETPREPRAFLAAVAKGLMFDHFRRTA
LEQAYLAELALIPEAEQPSPEMQHLILEDLKAIDRLLGKLSSKARAAFLHSRLDGMGHAEIAERLGVSVSRVRQYIAQGM
RQCYVALYGEPT

• Homologs from PAI DB

Gene	GenBank Accn	Product	Virulance or Resistance	PAI or REI	Alignment Type	E-val	Identity
unnamed	AAL08458.1	FecI	Virulence	SRL	Protein	5e-29	47

• Homologs from VFDB (virulence genes)

Gene	GenBank Accn	Product	ID of source DB	Alignment Type	E-val	Identity
YSA_05717	YP_006386984.1	RNA polymerase sigma factor	VFG1049	Protein	2e-29	47