Gene Information

Name : YSA_06480 (YSA_06480)
Accession : YP_006387376.1
Strain : Pseudomonas putida ND6
Genome accession: NC_017986
Putative virulence/resistance : Virulence
Product : ECF subfamily RNA polymerase sigma-24 factor
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3484734 - 3485249 bp
Length : 516 bp
Strand : -
Note : -

DNA sequence : 
ATGCAGATCAACGACACGCTCAAGCCCACCGAGGTCGCTCTGCTCTACCAGTCTCACCATGCCTGGTTGCGTGGTTGGTT
ACGCAGCCGGGTCGGTTGCAGTGAACATGCCGCAGACCTGGCCCAGGATACCTTCGTGCGGTTGTTGCGCGCCCGCCACG
TGTCGCCGCTCAAAGAACCGCGCGCCTACCTCAGCAGCATCGCCCGTGGCTTGATGATCGACCAGTTCCGCCGCCGCGCG
CTGGAGCGGGCCTACCAGGAGAGCCTGGCTCACCTGCCCGAAGCAGAAGTGCCCAGCGAAGAGGATAAGCTTGTCATCCT
CGATAGCCTGGAACGCCTCGACCGCGCCTTGCACCAGTTGAAACCGCGCGTCCGCCAAGCGTTCCTGCTGGCCCAGCTAG
ACGGTTTGAGCATCGTGCAGGTTGCCCAACGTCTGGAGGTGTCCAGGGCCACCGTTGAGCGCGATCTGGCCAAGGCCCTG
GGCGTCTGCTACCGGTTGCGCTATGCCGATGCCTGA

Protein sequence : 
MQINDTLKPTEVALLYQSHHAWLRGWLRSRVGCSEHAADLAQDTFVRLLRARHVSPLKEPRAYLSSIARGLMIDQFRRRA
LERAYQESLAHLPEAEVPSEEDKLVILDSLERLDRALHQLKPRVRQAFLLAQLDGLSIVQVAQRLEVSRATVERDLAKAL
GVCYRLRYADA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAL08458.1 FecI Virulence SRL Protein 2e-33 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
YSA_06480 YP_006387376.1 ECF subfamily RNA polymerase sigma-24 factor VFG1049 Protein 6e-34 44