Gene Information

Name : YSA_00177 (YSA_00177)
Accession : YP_006383987.1
Strain : Pseudomonas putida ND6
Genome accession: NC_017986
Putative virulence/resistance : Virulence
Product : ECF subfamily RNA polymerase sigma-24 factor
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 87210 - 87722 bp
Length : 513 bp
Strand : -
Note : -

DNA sequence : 
ATGATCGACGCCGCGCCGCCACCGGAGCCTGGCCTGCCTGCCCTGTACCGGGAGCATCGCGGCTGGCTTGAAACCTGGCT
GCGCCGGCGTATGGGCAATGCCTGGGATGCCGCCGACCTCAGTCAGGATACTTTTCTGCGCATCCTGGCCAGCGCCCAGC
CGCTGGCAGACATACGCGAACCGCGTGCCTACCTGCTGACCGTGGGCAAGCGTTTGCTCAGCAATTTCCACCAGCGACGT
AGCCTGGAGCAGGCCTACCTTGATGCCTTGGCGCAGTTGCCCGAGCAACACGTGCCGTCGCCAGAACAGCGCTGGGTACT
GCTCGAAACCCTGCAAGCACTGGATGAATTGCTCGACGGCCTCAAGCCGCCGATCCGCAAGGCCTTTCTCTGGAGCCAGC
TGGAAGGCTTGGGCTACGCCGAGATTGGCCAGCGCCTGGGCGTCTGCCAGCGCTCGGTGAAACGCTACATGGCGCAGGCT
TACGAACATTGCCTGTTGGCCGAGTTGCAATGA

Protein sequence : 
MIDAAPPPEPGLPALYREHRGWLETWLRRRMGNAWDAADLSQDTFLRILASAQPLADIREPRAYLLTVGKRLLSNFHQRR
SLEQAYLDALAQLPEQHVPSPEQRWVLLETLQALDELLDGLKPPIRKAFLWSQLEGLGYAEIGQRLGVCQRSVKRYMAQA
YEHCLLAELQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAL08458.1 FecI Virulence SRL Protein 9e-33 53

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
YSA_00177 YP_006383987.1 ECF subfamily RNA polymerase sigma-24 factor VFG1049 Protein 4e-33 53