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Name : rpoB (USDA257_c33820) Accession : YP_006398699.1 Strain : Sinorhizobium fredii USDA 257 Genome accession: NC_018000 Putative virulence/resistance : Unknown Product : DNA-directed RNA polymerase subunit beta Function : - COG functional category : - COG ID : - EC number : 2.7.7.6 Position : 3556097 - 3560239 bp Length : 4143 bp Strand : + Note : - DNA sequence : ATGGCTCAGACCCTTTCGTTCAACGGTCGTAGGCGCGTACGCAAGTTTTTTGGAAAGATCCCCGAAGTCGCAGAGATGCC GAACCTCATCGAGGTTCAGAAGGCGTCCTACGACCAGTTCCTCATGGTGGAAGAGCCCGCAGGCGGACGCCCCGACGAGG GACTTCAAGCTGTTTTCAAATCGGTATTTCCGATCAAGGATTTCTCGGGCGCCTCGATGCTCGAATTCGTTTCCTACGAA TTCGAACCGCCGAAGTTCGACGTCGAAGAATGCCGCCAGCGCGACCTGACCTATGCGGCGCCGCTCAAGGTGACGCTGCG GCTGATCGTGTTCGATATCGACGAGGACACCGGCGCCAAGTCGGTCAAGGACATCAAGGAACAGAACGTCTACATGGGCG ACATGCCGCTCATGACGGACAATGGTACCTTCATCGTCAACGGCACCGAGCGCGTCATCGTCTCGCAGATGCACCGTTCG CCGGGCGTCTTCTTCGACCATGACAAGGGCAAGAGCCACTCTTCCGGCAAGCTGCTTTTCGCCGCGCGCGTCATTCCGTA TCGCGGTTCGTGGCTCGACATCGAGTTCGACGCCAAGGACATCGTGCATGCGCGTATCGACCGTCGCCGCAAGATTCCGG TGACGTCGCTCCTGATGGCGCTCGGCATGGATGGAGAGGAAATCCTCGACACGTTCTACACGAAGTCGCTCTACCAGCGT GACGGCGAGGGCTGGCGCGTGCCGTTCCAGCCGGATGCGCTGAAGGGTCAGAAGACGCTCGCCGACATGATCGACGCCGA CACCGGCGAAGTTGTCGTCGAGACCGGCAAGAAGCTGACGCCGCGCCTGCTGCGGCAGTTGCAGGACAAGGGCCTGAAGG CGCTCAAGGCGACCGACGACGACCTCTACGGCAACTACCTCGCCGAGGACGTCGTCAACATCGAAACCGGCGAAATCTAC CTGGAAGCCGGCGACGAGATCGACGAGAAGACGCTTCCCGTCATCCTGTCGGCCGGCTTCGACGAGATCCCGGTTCTCGA CATCGACCATATCAATGTCGGTGCCTACATCCGCAACACGCTTTCTGCCGACAAGAATGAGAACCGGCAGGATGCGCTGT TCGACATCTATCGCGTCATGCGCCCCGGCGAGCCGCCGACCATGGATTCGGCCGAAGCCATGTTCAACGCGCTGTTCTTT GACGCCGAGCGCTACGACCTCTCGGCCGTCGGCCGCGTGAAGATGAACATGCGCCTCGACCTCGACGTGCCGGACACCGT CCGCACGCTGCGCAAGGAAGATATCCTGGCGGTCGTCAAGATGCTGGTCGAGCTGCGCGACGGCAAGGGCGAGATCGACG ACATCGACAATCTCGGCAACCGCCGCGTCCGCTCGGTCGGCGAGTTGATGGAGAATCAGTACCGTCTGGGCCTCCTGCGC ATGGAGCGCGCGATCAAGGAACGCATGTCCTCGATCGAGATCGACACCGTCATGCCGCAGGATCTGATCAACGCGAAGCC GGCAGCTGCTGCCGTTCGCGAGTTCTTCGGCTCCTCGCAGCTTTCGCAGTTCATGGACCAGGTGAACCCGCTCTCGGAAA TCACCCACAAGCGCCGCCTTTCGGCTCTTGGCCCGGGTGGTTTGACCCGCGAGCGCGCCGGCTTCGAAGTGCGCGACGTG CATCCGACCCATTACGGCCGCATCTGCCCGATCGAAACGCCGGAAGGTCCGAACATCGGTCTGATCAACTCGCTTGCGAC CTTTGCCCGCGTCAACAAGTACGGCTTCATCGAGAGCCCGTATCGCAAGATCGTCGACGGCAATGTGACGAGCGACGTCG TCTATCTTTCGGCGATGGAGGAAGCGAAGTACCACGTCGCTCAGGCCAACTCGGTGCTGAACGATGACGGGTCCTTCGCT GAAGAGTTCGTCGTCTGCCGTCATGCCGGCGAAGTTATGCTGGCACCGCGCGACAACATCAACCTGATGGACGTTTCGCC GAAGCAGCTCGTTTCGGTCGCCGCGGCGCTCATCCCGTTCCTCGAGAACGACGACGCCAACCGAGCGCTGATGGGCTCGA ACATGCAGCGTCAGGCTGTGCCGCTGCTGAGAGCCGAGGCTCCGTTCGTCGGCACCGGTATGGAATCGGTGGTTGCGCGC GACTCCGGCGCGGCGATTGCCGCCCGCCGTGGCGGCGTCGTCGACCAGGTCGATGCGACGCGTATCGTTGTCCGCGCTAC CGAAGACCTCGATCCGTCGAAGTCCGGCGTCGATATCTACCGTCTGCAGAAGTTCCAGCGCTCCAACCAGAATACCTGCG TCAACCAGCGCCCGCTGGTCACCGTCGGTGACTTGGTGAACAAGGGCGACATCATCGCGGACGGTCCGTCGACCGATCTC GGTGACCTGGCTCTCGGCCGCAACGCGCTCGTCGCGTTCATGCCGTGGAACGGCTACAACTACGAAGACTCGATCCTGCT TTCCGAGCGGATCGTGCGCGATGACGTCTTCACCTCGATCCATATCGAGGAATTCGAAGTGATGGCACGCGACACCAAGC TCGGTCCGGAAGAAATCACGCGCGACATTCCGAACGTATCGGAAGAAGCGCTGAAGAACCTGGACGAAGCCGGTATCGTC TACATCGGCGCCGAAGTTCAGCCGGGGGACATCCTGGTCGGCAAGATCACGCCGAAGGGCGAAAGCCCGATGACGCCGGA AGAAAAGCTGCTGCGCGCCATCTTCGGCGAAAAGGCGTCGGACGTGCGTGATACGTCCATGCGCATGCCGCCCGGCACCT TCGGTACGATCGTCGAAGTTCGTGTCTTCAACCGCCACGGTGTGGAGAAGGACGAGCGTGCGATGGCGATCGAACGCGAG GAGATCGAACGCCTCGCCAAGGACCGCGACGACGAGCAGGCGATCCTCGACCGCAACGTCTATGCGCGCCTCATTGATAT GTTGCGCGGTCATGTTGCCGTTGCCGGGCCGAAGGGCTTCAAGAAGGGAACCGAACTGTCGAATGCGGTGATCAGTGAAT ATCCGCGCTCGCAGTGGTGGATGTTCGCCATCGAGGACGAAAAGGCTCAGGGCGAGATCGAAGCGCTTCGCGCCCAGTAC GACGAGTCCAAGTCGCGCCTCGAACAGCGCTTTATGGACAAGGTCGAGAAGGTCCAGCGTGGCGACGAAATGCCTCCGGG CGTCATGAAGATGGTCAAGGTCTTCGTCGCCGTGAAGCGCAAGATCCAGCCGGGTGACAAGATGGCCGGCCGTCACGGCA ACAAGGGCGTCGTGTCGCGGATCGTGCCGATCGAAGACATGCCGTTCCTCGAAGATGGCACGCATGTCGACGTGGTGCTG AACCCGCTCGGCGTGCCGTCGCGCATGAACGTCGGTCAGATCCTTGAGACGCATCTCGGCTGGGCTTGCGCCGGAATGGG CAAGAAGATCGGCGCGATGCTCGATGCCTATAAGGCCGGATCTGACATCCAGCCGCTGCGCGACACCATTGACAGCGTCA TCGGATCCGGTCCGAAGGGCGAGCCGATCAAGCAGTACGACGATGAATCGATCGTGCGGCTGGCCGAGCAGACCCGCCGC GGCGTCTCTATCGCAACGCCCGTCTTCGACGGCGCTGTCGAGGCGGACGTCAACGAGATGCTTGAGCAGGCAGGTCTGAA GGTAACGGGTCAGTCGACGCTTTATGATGGCCGTACCGGCGATCAGTTCGACCGTCAGGTGACCGTTGGCTACATCTACA TGCTGAAGCTCAACCACCTGGTCGACGACAAGATCCACGCCCGTTCGATCGGTCCGTACTCGCTCGTCACCCAGCAGCCG CTGGGCGGCAAGGCGCAGTTCGGCGGCCAGCGCTTCGGCGAAATGGAGGTCTGGGCGCTCGAAGCCTACGGCGCCGCCTA CACGCTGCAGGAAATGCTGACGGTCAAGTCGGACGACGTGGCCGGCCGCACCAAGGTCTACGAGGCGATCGTCCGTGGCG ACGATACGTTTGAGGCGGGCATTCCGGAGAGCTTCAACGTTCTCGTCAAGGAAATGCGCTCGCTCGGCCTCTCCGTCGAG CTGGAGAACTCGAAGGTCGACGATGTCGGCACGGCGGCGCAGCTGCCGGACGCGGCGGAGTAA Protein sequence : MAQTLSFNGRRRVRKFFGKIPEVAEMPNLIEVQKASYDQFLMVEEPAGGRPDEGLQAVFKSVFPIKDFSGASMLEFVSYE FEPPKFDVEECRQRDLTYAAPLKVTLRLIVFDIDEDTGAKSVKDIKEQNVYMGDMPLMTDNGTFIVNGTERVIVSQMHRS PGVFFDHDKGKSHSSGKLLFAARVIPYRGSWLDIEFDAKDIVHARIDRRRKIPVTSLLMALGMDGEEILDTFYTKSLYQR DGEGWRVPFQPDALKGQKTLADMIDADTGEVVVETGKKLTPRLLRQLQDKGLKALKATDDDLYGNYLAEDVVNIETGEIY LEAGDEIDEKTLPVILSAGFDEIPVLDIDHINVGAYIRNTLSADKNENRQDALFDIYRVMRPGEPPTMDSAEAMFNALFF DAERYDLSAVGRVKMNMRLDLDVPDTVRTLRKEDILAVVKMLVELRDGKGEIDDIDNLGNRRVRSVGELMENQYRLGLLR MERAIKERMSSIEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQVNPLSEITHKRRLSALGPGGLTRERAGFEVRDV HPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFIESPYRKIVDGNVTSDVVYLSAMEEAKYHVAQANSVLNDDGSFA EEFVVCRHAGEVMLAPRDNINLMDVSPKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLLRAEAPFVGTGMESVVAR DSGAAIAARRGGVVDQVDATRIVVRATEDLDPSKSGVDIYRLQKFQRSNQNTCVNQRPLVTVGDLVNKGDIIADGPSTDL GDLALGRNALVAFMPWNGYNYEDSILLSERIVRDDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEALKNLDEAGIV YIGAEVQPGDILVGKITPKGESPMTPEEKLLRAIFGEKASDVRDTSMRMPPGTFGTIVEVRVFNRHGVEKDERAMAIERE EIERLAKDRDDEQAILDRNVYARLIDMLRGHVAVAGPKGFKKGTELSNAVISEYPRSQWWMFAIEDEKAQGEIEALRAQY DESKSRLEQRFMDKVEKVQRGDEMPPGVMKMVKVFVAVKRKIQPGDKMAGRHGNKGVVSRIVPIEDMPFLEDGTHVDVVL NPLGVPSRMNVGQILETHLGWACAGMGKKIGAMLDAYKAGSDIQPLRDTIDSVIGSGPKGEPIKQYDDESIVRLAEQTRR GVSIATPVFDGAVEADVNEMLEQAGLKVTGQSTLYDGRTGDQFDRQVTVGYIYMLKLNHLVDDKIHARSIGPYSLVTQQP LGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVAGRTKVYEAIVRGDDTFEAGIPESFNVLVKEMRSLGLSVE LENSKVDDVGTAAQLPDAAE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 59 |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 59 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| rpoB | YP_006398699.1 | DNA-directed RNA polymerase subunit beta | NC_002516.2.881699.p | Protein | 0.0 | 60 |
| rpoB | YP_006398699.1 | DNA-directed RNA polymerase subunit beta | CP001138.1.gene4362. | Protein | 0.0 | 59 |
| rpoB | YP_006398699.1 | DNA-directed RNA polymerase subunit beta | NC_002695.1.914942.p | Protein | 0.0 | 59 |
| rpoB | YP_006398699.1 | DNA-directed RNA polymerase subunit beta | CP001918.1.gene250.p | Protein | 0.0 | 59 |
| rpoB | YP_006398699.1 | DNA-directed RNA polymerase subunit beta | CP000034.1.gene3741. | Protein | 0.0 | 59 |
| rpoB | YP_006398699.1 | DNA-directed RNA polymerase subunit beta | NC_009085.4918494.p0 | Protein | 0.0 | 59 |
| rpoB | YP_006398699.1 | DNA-directed RNA polymerase subunit beta | CP000647.1.gene4402. | Protein | 0.0 | 59 |
| rpoB | YP_006398699.1 | DNA-directed RNA polymerase subunit beta | NC_011595.7060572.p0 | Protein | 0.0 | 59 |
| rpoB | YP_006398699.1 | DNA-directed RNA polymerase subunit beta | NC_010410.6003841.p0 | Protein | 0.0 | 59 |
| rpoB | YP_006398699.1 | DNA-directed RNA polymerase subunit beta | NC_011586.7046027.p0 | Protein | 0.0 | 59 |
| rpoB | YP_006398699.1 | DNA-directed RNA polymerase subunit beta | NC_010400.5987325.p0 | Protein | 0.0 | 59 |
| rpoB | YP_006398699.1 | DNA-directed RNA polymerase subunit beta | NC_010611.6233925.p0 | Protein | 0.0 | 59 |
| rpoB | YP_006398699.1 | DNA-directed RNA polymerase subunit beta | NC_008702.1.4609796. | Protein | 0.0 | 59 |
| rpoB | YP_006398699.1 | DNA-directed RNA polymerase subunit beta | CP000675.2.gene392.p | Protein | 0.0 | 59 |
| rpoB | YP_006398699.1 | DNA-directed RNA polymerase subunit beta | CP004022.1.gene2794. | Protein | 0.0 | 58 |
| rpoB | YP_006398699.1 | DNA-directed RNA polymerase subunit beta | CP002695.1.gene18.p0 | Protein | 0.0 | 58 |
| rpoB | YP_006398699.1 | DNA-directed RNA polymerase subunit beta | NC_011035.1.6448762. | Protein | 0.0 | 57 |
