Gene Information

Name : USDA257_c48790 (USDA257_c48790)
Accession : YP_006400171.1
Strain : Sinorhizobium fredii USDA 257
Genome accession: NC_018000
Putative virulence/resistance : Virulence
Product : TetR family transcriptional regulator
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 5060189 - 5060842 bp
Length : 654 bp
Strand : -
Note : -

DNA sequence :
ATGTCCGCCCATGCCTTGCGGCGTTTCATCGCGTTTCAGGCCGCCTCAGTTACGGAACTTGACAAAACCGTCCAGACGGT
ATCTTTTGTCGATATGACGAGCGCCTATCAAAGAAAGAAGCAGCCGGAGCGGGTTCGCCAGCAATTGCTGGATGTCGCTG
CGCGGCTGTCGCTCGAGCAAGGGATCACCGCAGTGACGCTCGAAAAAGTGTCGCAGGCGGCCGGCGTCAGCAAGGGCGGA
TTGCTGCACCACTTTCCCAACAAGCTCGCTTTGCTCGACGGCCTGTTCGACGAATTGATCGGCCGCTTCGACCGCGCGAT
CGAGGCGGCGATGGCGGACGATGGGGTGGAGCAGGGGCGGTTTACCCGCGCCTATCTCACCGTCTGCTTTGCACTGGACG
CGGAAGCGGAAGGGCAGGGCTGGCAGGTGCTGACGATTGCGCTGCTTGCGGAGCCGCATCTCAAGGCGCGCTGGCGGGAA
TGGGTGGAGCGACGATCGGCCGAGTTCGCAGCGACCGACGGCTCGCCGAATTGCCTGCTTGCCCGGTTTGCCGCTGACGG
CATCTGGCTTGCCGACCTGATGCAGAGCCATGATATCGATGCGCCCACGCGGGCGGCGCTGCTTCAGAAGCTCAAAGCCC
TTTCACTGCGGTGA

Protein sequence :
MSAHALRRFIAFQAASVTELDKTVQTVSFVDMTSAYQRKKQPERVRQQLLDVAARLSLEQGITAVTLEKVSQAAGVSKGG
LLHHFPNKLALLDGLFDELIGRFDRAIEAAMADDGVEQGRFTRAYLTVCFALDAEAEGQGWQVLTIALLAEPHLKARWRE
WVERRSAEFAATDGSPNCLLARFAADGIWLADLMQSHDIDAPTRAALLQKLKALSLR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAD42082.1 hypothetical protein Not tested PAI II 536 Protein 1e-29 45

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
USDA257_c48790 YP_006400171.1 TetR family transcriptional regulator VFG1601 Protein 7e-30 45