Gene Information

Name : yfeB (USDA257_c55530)
Accession : YP_006400825.1
Strain : Sinorhizobium fredii USDA 257
Genome accession: NC_018000
Putative virulence/resistance : Virulence
Product : chelated iron transport system membrane protein YfeB
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 5767059 - 5767988 bp
Length : 930 bp
Strand : +
Note : -

DNA sequence : 
ATGAACCTTCAGGTAAAGGCCCGGCCTACGCCGCGGCCCGGCCCTCTGGACGAGGGCAGCGGCATTCGCGTCAGCAACGC
CACCGTGACCTATCGCAACGGCCACCGCGCGCTGCATGAGGCCTCGTTCGAAATCCCGACCGGCACGATTGCCGCGCTGG
TCGGAGTCAACGGCAGCGGCAAGTCCACGCTGTTCAAGGCGATCATGGGCTTCGTCCGGCTGGCCAGGGGCGATATCTCA
GTCCTCGGCCTCACCGTGCCGCAGGCGCTGAAGAAGAACCTCGTCGCCTATGTGCCGCAGGCCGAGGAGGTCGACTGGAA
TTTTCCTGTCCTCGTCGAGGACGTGGTGATGATGGGCCGCTACGGCCACATGAACATGCTACGCATACCGAAGCGGGCCG
ATCACGAGGCGGTGGAGGCAGCGCTGGCGCGGGTCGGCATGAGCGAGTTCCGCAAGCGTCAGATCGGCGAGCTTTCCGGC
GGCCAGAAGAAGCGCGTCTTCCTTGCCCGGGCGCTGGCCCAGGAGGGCCAAGTCATCCTGCTTGACGAACCCTTCACCGG
CGTCGATGTGAGGACCGAAGACGCGATCATCCGCCTGCTTCTCGCACTTCGCGACGAGGGACGCGTGATGCTCGTCTCCA
CCCACAATCTCGGCAGCGTGCCGGAATTCTGCGACCGGACCGTGCTGCTGAAGAACACCGTTCTCGCTTACGGCCCGACC
GAGACGACCTTTACCCGCGACAATCTCGAACTCGCCTTCGGCGGCGTGCTGCGTCATTTCGTGCTCGGCGGGGAGAGCCT
CCACGATGACGCCGATCCGCGCCAGCTTTCCGTCATCACCGACGACGAACGCCCCCTGGTCATGTATGGCGCGAAGGGTC
GGATGGTGACCCAACCGGCGAAGCCCGAGGCTGAGGCGGACAGCGAATGA

Protein sequence : 
MNLQVKARPTPRPGPLDEGSGIRVSNATVTYRNGHRALHEASFEIPTGTIAALVGVNGSGKSTLFKAIMGFVRLARGDIS
VLGLTVPQALKKNLVAYVPQAEEVDWNFPVLVEDVVMMGRYGHMNMLRIPKRADHEAVEAALARVGMSEFRKRQIGELSG
GQKKRVFLARALAQEGQVILLDEPFTGVDVRTEDAIIRLLLALRDEGRVMLVSTHNLGSVPEFCDRTVLLKNTVLAYGPT
ETTFTRDNLELAFGGVLRHFVLGGESLHDDADPRQLSVITDDERPLVMYGAKGRMVTQPAKPEAEADSE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitB NP_457256.1 Iron transport protein, ATP-binding component Virulence SPI-1 Protein 5e-92 73
sitB NP_806465.1 iron ABC transporter ATP-binding protein Virulence SPI-1 Protein 5e-92 73
sitB AAD41066.1 SitB Virulence centisome 63 pathogenicity island Protein 1e-90 72
sitB NP_461783.1 ATP-binding protein Virulence SPI-1 Protein 2e-90 72
sitB YP_217782.1 iron transporter: fur regulated Virulence SPI-1 Protein 2e-90 72

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
yfeB YP_006400825.1 chelated iron transport system membrane protein YfeB BAC0350 Protein 8e-91 72
yfeB YP_006400825.1 chelated iron transport system membrane protein YfeB BAC0440 Protein 2e-90 68
yfeB YP_006400825.1 chelated iron transport system membrane protein YfeB BAC0400 Protein 1e-45 46

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
yfeB YP_006400825.1 chelated iron transport system membrane protein YfeB VFG0526 Protein 8e-91 72