|
Name : Alfi_2050 (Alfi_2050) Accession : YP_006411038.1 Strain : Alistipes finegoldii DSM 17242 Genome accession: NC_018011 Putative virulence/resistance : Unknown Product : DNA-directed RNA polymerase subunit beta Function : - COG functional category : - COG ID : - EC number : - Position : 2296481 - 2300341 bp Length : 3861 bp Strand : + Note : PFAM: RNA polymerase Rpb2, domain 3; RNA polymerase Rpb2, domain 6; RNA polymerase beta subunit external 1 domain; RNA polymerase Rpb2, domain 2; RNA polymerase beta subunit; RNA polymerase Rpb2, domain 7; TIGRFAM: DNA-directed RNA polymerase, beta subuni DNA sequence : ATGTCCACAGCAAAAACACAACAAAGAATTAGCTTTTCGACAGTCAAGAACCGGGTGCCTTATCCCGATCTGCTGGAGGT ACAGCTTAAATCATTCCGGGACTTTTTCCAGATGGACACCACGGCCGAAAATCGTAAAAACGAGGGGCTGTATAAGGTGT TTCAGGAGAATTTCCCCATTACGGATACCCGGAACAATTTCGTTCTGGAGTTCATCGACTACTATATCGACCCGCCGCGC TACTCGATCGAGGAGTGTCTGGAGCGCGGGCTGACGTACAGCGTTCCCCTGAAAGCCAAACTCAAGCTTTACTGCACGGA CGACGAGCACGAAGATTTCGGTGTCGTCGTTCAGGATGTGTACTTCGGTACGATTCCCTATATGACCGAACGCGGTACGT TCGTCATCAACGGTGCGGAGCGTGTCATCGTATCCCAGCTGCACCGTTCGCCGGGCGTGTTCTTCGGACAGAGCATGCAC ACCAACGGCACGAAGCTCTATTCGGCGCGTATCATTCCTTTCAAGGGTTCGTGGATCGAATTTGCAACGGACATCAACAA CGTGATGTATGCCTACATCGACCGTAAGAAGAAGCTTCCCGTCACCACGCTGCTGCGCGCCATCGGCTACGAGGCGGACC AGCAGATTCTCGAAATCTTCGATCTGGCGGACGAAGTGAAGGTCACGAAGGCCAACCTCAAGAAGGCCGTGGGCCGCAAG CTCGCCGCACGTGTGCTTTCGACGTGGGTCGAGGACTTCGTGGACGAAGATACGGGCGAGGTGGTTTCCATCGAGCGCAA CAACGTTATCGTGGACCGCGAGACGGTCCTCGAAGAGGAACATGTGGACCAGATTCTCGAAAGCGGCGCCAAGACGATCC TCCTGCATAAGGAGAGCCTGTCGGGCATCGATTTCTCGATCATATACAATACCCTGCAGAAAGACCCCTGCAACTCCGAG AAGGAGGCTGTCGTTTACATCTACCGGCAGCTGCGCGCTTCGGAGCCGCCCGATGAGGCGACGGCGCGCGATGTCATCGA GAAGCTGTTCTTCTCGGACAAGCGCTACGACTTGGGCGACGTGGGCCGCTACCGCATCAACAAGAAGCTGGATCTGGATA CCGATCCGGCCATTCGCACGTTGACGCGCGAGGACATCATCGCCATTATCAAATACCTGATCCAGCTGATCAACTCCAAG GCCGACGTGGACGATATCGACCACCTGTCGAACCGCCGCGTGCGCACCGTGGGCGAACAGCTGTCGAATCAGTTCTCGGT AGGTTTCGTGCGCATGGCGCGTACGATCCGCGAGCGTATGAACGTGCGTGACAACGAGGTGTTTACGCCGGTGGATCTGA TCAACGCCAAGACGTTGTCTTCGGTGATCAACTCGTTCTTCGGCACTTCGCAGCTCTCGCAGTTCATGGACCAGATCAAC CCGCTGGCCGAAATTACGCACAAGCGCCGTCTGTCGGCCCTCGGCCCCGGCGGTCTGTCGCGTGACCGCGCCGGTTTCGA GGTGCGAGACGTACACTACACGCATTACGGCCGTCTCTGCCCGATCGAGTCGCCGGAAGGCCCGAACATCGGTCTGATTT CGTCGCTCTGCGTTTATGCGAAGATTTCGCCGATGGGATTCATCGAGACTCCCTACCGGAAGGTCGAGAACGGACAGATC GACATGAACAACGACGACATCCGCTACTACTCGGCCGAAGAGGAGGAGGGCAAGATCGTCGCGCAGGCGAACATGCCGAT CGACGACGAAGGCCACTTCCTGCAGCCCGACCGTATCAAGGCGCGCGAAGGCGCCGACTTCCCGGTGGTTACCGCCGAGG AGGTGAATCTGATGGACGTGGCTCCGAACCAGATCGCTTCGATCGCCGCGAGCCTTATCCCGTTCCTCGAACACGATGAC GCCAACCGCGCCCTGATGGGTTCGAACATGATGCGTCAGGCCGTGCCTCTGGTGACTACGGACGCTCCTATCGTCGGCAC GGGCATCGAGAAGGACATGATCTCTGACAGCCGCATCCAGATTGTGGCCGAAGGCGACGGCGAAGTGACTTTCGCCGACG CGACGAAGATACAGATCAGGTACGAGCGTACGGAAGACGAGATTCTGGCGTCGTTCGAGCCGGAAGTGACCACATACGAG CTTCCGCGCTACCGCCGTACCAACCAGAATACTTCCATCACCCTGAAGCCCATCGTACTGACGGGCGACAAGGTCGTGAA GGGACAGATCCTTACCGAAGGCTATTCGACGCAGCACGGTGAGCTGGCTCTGGGCCGCAACCTGAAGGTGGCGTTCATGC CTTGGAAGGGTTACAACTTCGAGGACGCCATCGTGATTTCGGAGCGTATCCAGCGTGAGGACATCTTCACGTCGGTGCAC GTTGACGAGTACATCATGGAGGTGCGCGACACCAAGCGCGGTGTCGAGGAGCTGACTTCGGACATTCCGAACGTGAGCGA GGACGCTACCAAGGACCTCGACGCGAACGGTATCATCCGTATCGGCGCCAACGTGCATCCGGGCGACATCCTGATCGGCA AGATCACCCCGAAGGGCGAAAGCGATCCTTCGCCTGAGGAGAAGCTGCTCCGCGCCATCTTCGGCGACAAGGCCGGCGAC GTGAAGGACGCCTCGCTCAAGGCGCAGCCTTCGCTGCACGGCGTGGTGATCGACACGAAGCTCTACAGCCGCGCCAACAA GGAGGGCAAGAAGGGCAAGAGCGCCGAGAAGGTGCAGATCGAGAAACTCGACGAGAAGTTCGCAGCCGAGATTGCGGAGC TGACCAAACGGCTGGTGGCCAAGTTGTGGACCCTGCTTCAGGGCAAGACCACGACCGGCGTCACCGACTACTTCGGCGTG GAACTCTATCCCGCAGGCACGAAATTCTCGCAGAAGATGCTGGAGGAGATCGCCCGCAAGACCACGGACGAGAAGACCGG CGTGGTGATGGGTTATCTGAATCTCGGCACCTGCAAGTGGACGGGTGACGCCCACACCGACGCGCTGATCGAAGCTACCA TTAACAATTATACCATCGAATGGAAGAAGGCCGACGCCGCCATCAAGCGTGAGAAGTACAACATCACCAACGGCGACGAG CTTCCGCAGACGGGCGTCATTCAGATGGCCAAGGTCTACATCGCCAAGAAGCGCAAGCTCAAGGTGGGCGACAAGATGGC AGGACGCCACGGCAACAAGGGTATCGTAGCCCGTATCGTGCGCGACGAGGACATGCCGTTCCTCGAAGACGGTACGATCG TCGATATCTGTCTGAACCCGCTGGGCGTGCCTTCGCGAATGAACCTCGGACAGATTTACGAGACCGTGCTCGGATGGGCG GGCCGTGAACTGGGCCTGAAGTTCGCAACGCCGATCTTCGACGGTGCGTCGCTCGACCAGATCAACGAGTACACGGCCAA GGCGGGTATTCCGCACAGCGGCCGTACGTACCTCTACGACGGCGGCACGGGCGAAATGTTCGACCAGCCGGCGACGGTGG GCGTGATCTACATGCTCAAGCTCGGCCACATGATCGATGACAAGATGCACGCCCGTTCGATCGGTCCCTACTCGCTCATC ACGCAGCAGCCGCTCGGCGGTAAGGCCCAGTTCGGCGGCCAGCGTTTCGGTGAGATGGAGGTTTGGGCGCTCGAAGGCTT CGGCGCCGCCAACATCCTGCAGGAGATCCTGACCATCAAGTCCGACGACGTGATGGGCCGCGCCAAGGCTTACGAGGCGA TCGTCAAGGGCGAGAACCTGCCCAAACCGGGTATTCCGGAGGCTATGAACGTGCTGCTGCACGAGCTTCGCGGTCTGGCC CTGTCGGTCAAACTCGAATAA Protein sequence : MSTAKTQQRISFSTVKNRVPYPDLLEVQLKSFRDFFQMDTTAENRKNEGLYKVFQENFPITDTRNNFVLEFIDYYIDPPR YSIEECLERGLTYSVPLKAKLKLYCTDDEHEDFGVVVQDVYFGTIPYMTERGTFVINGAERVIVSQLHRSPGVFFGQSMH TNGTKLYSARIIPFKGSWIEFATDINNVMYAYIDRKKKLPVTTLLRAIGYEADQQILEIFDLADEVKVTKANLKKAVGRK LAARVLSTWVEDFVDEDTGEVVSIERNNVIVDRETVLEEEHVDQILESGAKTILLHKESLSGIDFSIIYNTLQKDPCNSE KEAVVYIYRQLRASEPPDEATARDVIEKLFFSDKRYDLGDVGRYRINKKLDLDTDPAIRTLTREDIIAIIKYLIQLINSK ADVDDIDHLSNRRVRTVGEQLSNQFSVGFVRMARTIRERMNVRDNEVFTPVDLINAKTLSSVINSFFGTSQLSQFMDQIN PLAEITHKRRLSALGPGGLSRDRAGFEVRDVHYTHYGRLCPIESPEGPNIGLISSLCVYAKISPMGFIETPYRKVENGQI DMNNDDIRYYSAEEEEGKIVAQANMPIDDEGHFLQPDRIKAREGADFPVVTAEEVNLMDVAPNQIASIAASLIPFLEHDD ANRALMGSNMMRQAVPLVTTDAPIVGTGIEKDMISDSRIQIVAEGDGEVTFADATKIQIRYERTEDEILASFEPEVTTYE LPRYRRTNQNTSITLKPIVLTGDKVVKGQILTEGYSTQHGELALGRNLKVAFMPWKGYNFEDAIVISERIQREDIFTSVH VDEYIMEVRDTKRGVEELTSDIPNVSEDATKDLDANGIIRIGANVHPGDILIGKITPKGESDPSPEEKLLRAIFGDKAGD VKDASLKAQPSLHGVVIDTKLYSRANKEGKKGKSAEKVQIEKLDEKFAAEIAELTKRLVAKLWTLLQGKTTTGVTDYFGV ELYPAGTKFSQKMLEEIARKTTDEKTGVVMGYLNLGTCKWTGDAHTDALIEATINNYTIEWKKADAAIKREKYNITNGDE LPQTGVIQMAKVYIAKKRKLKVGDKMAGRHGNKGIVARIVRDEDMPFLEDGTIVDICLNPLGVPSRMNLGQIYETVLGWA GRELGLKFATPIFDGASLDQINEYTAKAGIPHSGRTYLYDGGTGEMFDQPATVGVIYMLKLGHMIDDKMHARSIGPYSLI TQQPLGGKAQFGGQRFGEMEVWALEGFGAANILQEILTIKSDDVMGRAKAYEAIVKGENLPKPGIPEAMNVLLHELRGLA LSVKLE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 44 |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 44 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Alfi_2050 | YP_006411038.1 | DNA-directed RNA polymerase subunit beta | NC_009085.4918494.p0 | Protein | 0.0 | 45 |
| Alfi_2050 | YP_006411038.1 | DNA-directed RNA polymerase subunit beta | NC_010410.6003841.p0 | Protein | 0.0 | 44 |
| Alfi_2050 | YP_006411038.1 | DNA-directed RNA polymerase subunit beta | NC_011586.7046027.p0 | Protein | 0.0 | 44 |
| Alfi_2050 | YP_006411038.1 | DNA-directed RNA polymerase subunit beta | NC_010400.5987325.p0 | Protein | 0.0 | 44 |
| Alfi_2050 | YP_006411038.1 | DNA-directed RNA polymerase subunit beta | NC_010611.6233925.p0 | Protein | 0.0 | 44 |
| Alfi_2050 | YP_006411038.1 | DNA-directed RNA polymerase subunit beta | NC_011595.7060572.p0 | Protein | 0.0 | 44 |
| Alfi_2050 | YP_006411038.1 | DNA-directed RNA polymerase subunit beta | NC_008702.1.4609796. | Protein | 0.0 | 44 |
| Alfi_2050 | YP_006411038.1 | DNA-directed RNA polymerase subunit beta | CP000675.2.gene392.p | Protein | 0.0 | 44 |
| Alfi_2050 | YP_006411038.1 | DNA-directed RNA polymerase subunit beta | CP001918.1.gene250.p | Protein | 0.0 | 44 |
| Alfi_2050 | YP_006411038.1 | DNA-directed RNA polymerase subunit beta | NC_002695.1.914942.p | Protein | 0.0 | 44 |
| Alfi_2050 | YP_006411038.1 | DNA-directed RNA polymerase subunit beta | CP001138.1.gene4362. | Protein | 0.0 | 44 |
| Alfi_2050 | YP_006411038.1 | DNA-directed RNA polymerase subunit beta | CP000034.1.gene3741. | Protein | 0.0 | 44 |
| Alfi_2050 | YP_006411038.1 | DNA-directed RNA polymerase subunit beta | CP000647.1.gene4402. | Protein | 0.0 | 44 |
| Alfi_2050 | YP_006411038.1 | DNA-directed RNA polymerase subunit beta | CP002695.1.gene18.p0 | Protein | 0.0 | 44 |
| Alfi_2050 | YP_006411038.1 | DNA-directed RNA polymerase subunit beta | NC_002516.2.881699.p | Protein | 0.0 | 43 |
| Alfi_2050 | YP_006411038.1 | DNA-directed RNA polymerase subunit beta | CP004022.1.gene2794. | Protein | 0.0 | 42 |
| Alfi_2050 | YP_006411038.1 | DNA-directed RNA polymerase subunit beta | NC_011035.1.6448762. | Protein | 0.0 | 42 |
| Alfi_2050 | YP_006411038.1 | DNA-directed RNA polymerase subunit beta | NC_012469.1.7686402. | Protein | 2e-167 | 41 |
